PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s868311g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 875aa MW: 95278.8 Da PI: 7.76

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s868311g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.6	5.1e-29	79	168	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA++vGF++r+s+ ++s+r+++i++r+ vCskeg+re + ++ +e+++r+ra+tr+gCka+++vkk +kw vtk+++eHnH PDK_30s868311g001 79 FYAAYARHVGFRIRISRYTRSRRDNSIISRRIVCSKEGFREARANEglfDEQRQRQRAVTRVGCKAMIMVKKIGPEKWIVTKFVKEHNHG 168 9*****************************************9999***************************************5 PP
2	FAR1	88.8	7.8e-28	216	308	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + k+ + k++r+r tr+gCka++ vkk ++gkw+vtk+e+eHnH+l PDK_30s868311g001 216 FYITYARHLGFRARISKYCRSRRDNSIISRQIVCSKEGFREVRVKNeitdEGKTKRPRLITRIGCKAMIIVKKANSGKWVVTKFEKEHNHSL 307 9****************************************9999998899999*********************************9 PP FAR1 90 a 90 a PDK_30s868311g001 308 A 308 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-25	79	168	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-25	216	308	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MSSIWMLRME DELVTPHIDS EDGKTEVTVA SMDIEPSVDE DNKMLESPVK GEIVASGGVA 60 DLEPYEGMEF ESEEAARAFY AAYARHVGFR IRISRYTRSR RDNSIISRRI VCSKEGFREA 120 RANEGLFDEQ RQRQRAVTRV GCKAMIMVKK IGPEKWIVTK FVKEHNHGPV PPRKVEVRTG 180 RRDDDLLVQS YISDGGAVQE PYEGMEFDSE EAAKAFYITY ARHLGFRARI SKYCRSRRDN 240 SIISRQIVCS KEGFREVRVK NEITDEGKTK RPRLITRIGC KAMIIVKKAN SGKWVVTKFE 300 KEHNHSLASL KMPCLESRSN AGKVINLQGA ITKPNGMVTD ESCAGTQGTS RESLTVLYNQ 360 LCCEAIKYAQ EGAATEDSYN VAMSALKEAV EKVAAAKRGA VTVAQQGLAI GGARQAFLIA 420 HPAQTKALQD LQCLNEVKQV PLILNIANGR LLHNRSDGLY TAHVTQVLNI ANAVSLLKQS 480 LPSTPSTDGL IGNGSEGSDL PAERKMAMQI VNRDVELDAG VQKFQAMSFH MHFVDNNYAD 540 MEYVNQDSAT AAEAASTSRS GCYNLTSPGS SETQMVAIPA VPMTVYMPVM GSLPASCSGC 600 YQSFLPSYIV ELAVRFFGKN MATYLSRGPS WYWLTTKMAE ILVLKTLIPD PYYLGLAAKM 660 IVATPGTSGG SYTLVAAPIE ALPVSARPAG PNPQIQDAPL QPAAASQSVL VLSPSPGNLL 720 EHCKSYSGPN PQVHATALAC GARVVSPKAA ASLIKAIEAK IRSGSASVAK SALAGGCKLL 780 SIQSPRPRAI EEGKSEHAPA NAIHKSQAES LEEMKLQTID MMPRELVVDP DHSGAENAGQ 840 NGSLFEKQIE LLDTAGAAED LSMFEKRAWT EIKCD

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MSSIWMLRME DELVTPHIDS EDGKTEVTVA SMDIEPSVDE DNKMLESPVK GEIVASGGVA  60
DLEPYEGMEF ESEEAARAFY AAYARHVGFR IRISRYTRSR RDNSIISRRI VCSKEGFREA  120
RANEGLFDEQ RQRQRAVTRV GCKAMIMVKK IGPEKWIVTK FVKEHNHGPV PPRKVEVRTG  180
RRDDDLLVQS YISDGGAVQE PYEGMEFDSE EAAKAFYITY ARHLGFRARI SKYCRSRRDN  240
SIISRQIVCS KEGFREVRVK NEITDEGKTK RPRLITRIGC KAMIIVKKAN SGKWVVTKFE  300
KEHNHSLASL KMPCLESRSN AGKVINLQGA ITKPNGMVTD ESCAGTQGTS RESLTVLYNQ  360
LCCEAIKYAQ EGAATEDSYN VAMSALKEAV EKVAAAKRGA VTVAQQGLAI GGARQAFLIA  420
HPAQTKALQD LQCLNEVKQV PLILNIANGR LLHNRSDGLY TAHVTQVLNI ANAVSLLKQS  480
LPSTPSTDGL IGNGSEGSDL PAERKMAMQI VNRDVELDAG VQKFQAMSFH MHFVDNNYAD  540
MEYVNQDSAT AAEAASTSRS GCYNLTSPGS SETQMVAIPA VPMTVYMPVM GSLPASCSGC  600
YQSFLPSYIV ELAVRFFGKN MATYLSRGPS WYWLTTKMAE ILVLKTLIPD PYYLGLAAKM  660
IVATPGTSGG SYTLVAAPIE ALPVSARPAG PNPQIQDAPL QPAAASQSVL VLSPSPGNLL  720
EHCKSYSGPN PQVHATALAC GARVVSPKAA ASLIKAIEAK IRSGSASVAK SALAGGCKLL  780
SIQSPRPRAI EEGKSEHAPA NAIHKSQAES LEEMKLQTID MMPRELVVDP DHSGAENAGQ  840
NGSLFEKQIE LLDTAGAAED LSMFEKRAWT EIKCD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008805726.1	0.0	uncharacterized protein LOC103718605
Refseq	XP_008805727.1	0.0	uncharacterized protein LOC103718605
TrEMBL	A0A2H3YYJ6	0.0	A0A2H3YYJ6_PHODC; uncharacterized protein LOC103718605
STRING	XP_008805726.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-33	FAR1 family protein