PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s867661g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 45476.5 Da PI: 6.0724 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.3e-52 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLp + ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++ PDK_30s867661g004 14 MMPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPkELAATGEKEWYFYCPRDRKYRNSDRPNRVTGAGFWKATGTDRP 104 579***************************.89***************445566889*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl PDK_30s867661g004 105 ICSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 ***956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-58 | 10 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.064 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MDERSDMDKG DEVMMPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KELAATGEKE WYFYCPRDRK YRNSDRPNRV TGAGFWKATG TDRPICSSDG TKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSPSNPSM PKRPLDKHIP ANDSWAICRI FQKTNSMAQK 180 ALSHSWVSPL PETNEQDVFS VSRSAHGIPF ASENMSCMAQ VGSAIQFGCN KSIQQQACTT 240 SYSPLDITSY KPIDLSSCKP SNLLPVSSAE IPKSFMFSPD EMSMLSKCTV DAASMLFNSS 300 PTIIGDVEET SASIDFEELQ QCGFTVGLPL EMSTSLGSGE EDISAKKPAN TCNVNNNQWG 360 AVKTVNFPFS LQSNLSDEWK SNMPWDSPQC PIEMSTSYSI NRCYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 16 | 180 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 16 | 180 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 16 | 180 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 16 | 180 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 16 | 180 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 16 | 180 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 16 | 180 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026664009.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-102 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A3Q0IAZ4 | 0.0 | A0A3Q0IAZ4_PHODC; protein FEZ-like | ||||
STRING | XP_008802608.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-104 | NAC family protein |
Publications ? help Back to Top | |||
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