PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s866091g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 716aa MW: 82308.2 Da PI: 7.2382

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s866091g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.1e-22	96	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ ++++++k++r+r+++r+gC+a +++ k+ +w+vt +++ HnHe PDK_30s866091g002 96 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGFPQAKQSDDSKAQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNVHNHE 187 6*************999887455667************************************98887676789*********** PP FAR1 89 la 90 l PDK_30s866091g002 188 LL 189 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-19	96	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-23	312	403	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.347	588	624	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.9E-7	595	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-4	599	626	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MRKPKKVRLE FGTDNKVQEE ENLKPITWMS IVQRALEASE NPGLVIDAPD ISTDLSPEDV 60 DSIDEMPEDA ILSKQTSVNL VPFIGQRFES QDAAYEFYCS FAKQCGFSIR RHRTRGKDGV 120 GRGITRRDFT CHRGGFPQAK QSDDSKAQRN RKSSRCGCQA YMRIVKRADF DVPEWRVTGF 180 SNVHNHELLK SNQVHHLPAY CTISADDKSR ICMFAKAGMS VRQMLRLMEL QKGVKLGCLP 240 FKEIDVRNLL QSFKKVDRDH DAIDLLAMCK KFKDEDPNFK YEFKIDGHNR LEHIAWSYAS 300 SVQLYEAFGD AVVFDTTHHA DAYDMLLGIW IGVDNHGMNC FFGCVLLRDE NMQSFSWALK 360 TFLGFMKGKA PQTILTDQNM WLKEAISVEM PSTKHAFCIW HIIAKFSDWF SVLLGSRYDY 420 WKAEFHRLYN MEVVEEFEVE WREMVNAYSL HTNKHIASLY ALRTYWALPY LRCYFFAGMT 480 ATIYSESVNA FIQQFLSAQS QLDHFVEQVA VIIDSKDQVG GKQKSQRKLH KICLKTGSPM 540 ESYVATVLTP YAFCKLQEEL VLAPQYASFP IEDGCFLVRH HKQVDGGCKV IWAPQEELIS 600 CSCHHFEFTG ILCRHVLRIL STNNCFRIPD EYLPSRWRRV NLPLTRCSRT ALREHAERVH 660 LLQSLVSTLM AESVESDERL EVALEQVAMV LSRIREFPGS THGMSDIAYG SPSEGF

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MRKPKKVRLE FGTDNKVQEE ENLKPITWMS IVQRALEASE NPGLVIDAPD ISTDLSPEDV  60
DSIDEMPEDA ILSKQTSVNL VPFIGQRFES QDAAYEFYCS FAKQCGFSIR RHRTRGKDGV  120
GRGITRRDFT CHRGGFPQAK QSDDSKAQRN RKSSRCGCQA YMRIVKRADF DVPEWRVTGF  180
SNVHNHELLK SNQVHHLPAY CTISADDKSR ICMFAKAGMS VRQMLRLMEL QKGVKLGCLP  240
FKEIDVRNLL QSFKKVDRDH DAIDLLAMCK KFKDEDPNFK YEFKIDGHNR LEHIAWSYAS  300
SVQLYEAFGD AVVFDTTHHA DAYDMLLGIW IGVDNHGMNC FFGCVLLRDE NMQSFSWALK  360
TFLGFMKGKA PQTILTDQNM WLKEAISVEM PSTKHAFCIW HIIAKFSDWF SVLLGSRYDY  420
WKAEFHRLYN MEVVEEFEVE WREMVNAYSL HTNKHIASLY ALRTYWALPY LRCYFFAGMT  480
ATIYSESVNA FIQQFLSAQS QLDHFVEQVA VIIDSKDQVG GKQKSQRKLH KICLKTGSPM  540
ESYVATVLTP YAFCKLQEEL VLAPQYASFP IEDGCFLVRH HKQVDGGCKV IWAPQEELIS  600
CSCHHFEFTG ILCRHVLRIL STNNCFRIPD EYLPSRWRRV NLPLTRCSRT ALREHAERVH  660
LLQSLVSTLM AESVESDERL EVALEQVAMV LSRIREFPGS THGMSDIAYG SPSEGF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807776.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3Z3S9	0.0	A0A2H3Z3S9_PHODC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_008807776.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]