PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s865231g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 604aa    MW: 66608.6 Da    PI: 5.9881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s865231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-075382127
                       --S---SGGGG...TS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffar...tGtCkyGdrCkFaHgp 27
                       +kt+lC+++++   +G C++Gd C++aHg+
  PDK_30s865231g001 53 WKTSLCSYYRQqpaGGRCSHGDACRYAHGE 82
                       8*********855468************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-124988IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8875283IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-45282IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-55382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3303.0E-7132200IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005902.06E-7132194No hitNo description
SuperFamilySSF549282.44E-7132200IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168720.294265604IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533354.29E-23268298IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.29E-23353546IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.5E-28467547IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.5E-9489546IPR025714Methyltransferase domain
CDDcd024401.14E-6495544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEREMNADAS PTSNEEFQPS DPRSVEEEAG DGAAEKRKRE EEEEKGERRK ALWKTSLCSY  60
YRQQPAGGRC SHGDACRYAH GEAELRPRPD NTWDPTSQRA KKLLKSETSA AEEEDSPPVS  120
VDATSLDKCL IGLPRKWTSD SLKSFLDAQD ILYKTAKKKK GMSVGFVGFE NIEQVKSAIE  180
VLNENSAGGK QIKVADAVRR CHEKKPSVDI SSDQSKGQNT ESHPGSDDPT LFSTSSTLIE  240
DGYAVEKDTS VVEGLVSKTK HARDVVTPLA NMPYNDQLEH KKSSLLQILK RLTRNARKAC  300
PDVVPLPEWI NTSREIVGIS GFTSSVQVLP PDELVQNDCP LHVGGLPCKL EGILESPVIN  360
GYRNKWQKNC GVHAWKFQVL FLNLEISGKA SQQSRNLSTV QMSLESPNMD GIILLTFHAR  420
SEREEVQVCL SGVDEELMKN EFSRMTQVLT QGAASCSPPL PLTTIVVQVN TLAAERLYSL  480
AGDWADLNSD TLLFDICCGT GTIGLTLAHH VGMVVGIEMN ESAVSDAQRN AMINGIKNCR  540
FVCGKVNIPM AILYTISPLM FVDLNVLKVS FMRNWLVTAI SPCFRAPNME SLQLHKNAKE  600
GNPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A7e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5xj2_A6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5xj2_B6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5xj2_C6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5xj2_D6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5zq0_A6e-14468543284359Uncharacterized RNA methyltransferase SP_1029
5zq1_A6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5zq8_A6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5zq8_B6e-14468543283358Uncharacterized RNA methyltransferase SP_1029
5zth_A6e-14468543284359Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791527.10.0zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3Y0W00.0A0A2H3Y0W0_PHODC; zinc finger CCCH domain-containing protein 24
STRINGXP_008791527.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-112C3H family protein