PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s863331g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 804aa    MW: 90030.7 Da    PI: 6.3178
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s863331g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l  +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  PDK_30s863331g003 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 215
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  PDK_30s863331g003 216 WNEKNQLLLGIRRA 229
                        8899999****997 PP
2Auxin_resp1141.3e-37254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++ +sdl p+rWpnS+Wrs+k
  PDK_30s863331g003 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITEISDLGPLRWPNSHWRSVK 337
                        79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-49113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-20127228No hitNo description
PfamPF023621.8E-21128229IPR003340B3 DNA binding domain
SMARTSM010191.3E-23128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323128230IPR003340B3 DNA binding domain
PfamPF065071.5E-32254337IPR010525Auxin response factor
SuperFamilySSF542772.35E-7703782No hitNo description
PROSITE profilePS5174524.41708792IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MKLSTAGLVQ QAQEGGEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNK  60
EVEGQIPNYP NLPPQLICQL HDVTMHADVE TDEVYAQMTL QPLNPQELND AYLPAELGIM  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELLA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYVKAVFH TRVSVGMRFR  300
MLFETEESSV RRYMGTITEI SDLGPLRWPN SHWRSVKIGW DESTAGERPP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWYP GVPSFHDEGN ALMWLRGGSG DRGLQSINFQ SPGMGPWVQQ  420
RMESTLLGND HDQYQAMAAA ALPDIRGSHY LKQQFLNFQQ PFQLPQQSYS TSPSSQQQII  480
QQACQQQIIS PRSPKISEIL THNVLQQQLQ QSLNNQKQVQ HTHTYPESYQ IPGTHVQQLQ  540
SPLPLQLCEK LEFPDSSVNF STVMTSSCVQ SMLGSAYPEG SSNILDLARL GQPMMSEQNQ  600
QTWEPKFTMS QSTTFGNTIL LPSFPGKDGS VGTENSSLDM QNHTLFGVNI DSSSLLSHAV  660
PGLRTNSIDN DISTMPYASS SLQNSIYGSL KESSGVLQNA EEADPTTKTF VKVYKSGSVG  720
RSLDITRFNS YDELREELSQ MFGIKGRLED PLRSGWQLVF VDRENDVLLL GDDPWESFVN  780
NVWYIKILSP EDVQEMGKQA TEPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641335843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813049.10.0auxin response factor 12-like isoform X1
RefseqXP_026656284.10.0auxin response factor 12-like isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3ZFM10.0A0A2H3ZFM1_PHODC; Auxin response factor
STRINGXP_008813049.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6