PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s861471g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 274aa    MW: 30349.8 Da    PI: 4.3387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s861471g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-161658955
                AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  PDK_30s861471g001 16 RP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 58
                       45.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.547666IPR001471AP2/ERF domain
PRINTSPR003671.0E-51021IPR001471AP2/ERF domain
CDDcd000181.34E-291467No hitNo description
SMARTSM003807.4E-321472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-271567IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-191567IPR016177DNA-binding domain
PfamPF008479.6E-91658IPR001471AP2/ERF domain
PRINTSPR003671.0E-53248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
DKAQDDEDDV PVKVKRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AEARKIRGKK  60
AKVNFPNEVS PSAQKHIQKA TAPRAPKPNQ PENLKFSQSF SYLGEPDQDS YSIFDFIEEK  120
QPIKQAENPS AFPAIKPVVP TGGPGMNLCS DQGSNSFGCS DFGWEREAKT PEITSVLAPI  180
PTITEGEESA FLEVGGPQKK LKNNAGEAVP PTEEDISEEL SVFESYMKFL QMPYLDGSVD  240
ESINSFLNSD LTQVVSDVDL WSFDDLLPVE NSVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1815702076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797374.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E66e-68ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A2H3YDZ10.0A0A2H3YDZ1_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008797374.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.38e-32related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]