PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s861391g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 554aa    MW: 61101.1 Da    PI: 8.2808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s861391g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-12181081799
                        E--HHH.HTT........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  17 vlpkkfaeeh........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++ ++ a+++         ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+++++
  PDK_30s861391g002  18 WIKNSSANQNynfeayfpAISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLVMGFRK 107
                        566666666666666677445556677***************9989999999***9.********************987.77778877776 PP

                        S CS
                 B3  99 k 99 
                        +
  PDK_30s861391g002 108 A 108
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.4E-814109IPR003340B3 DNA binding domain
PfamPF023628.4E-1024108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-1830109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-1131107No hitNo description
SuperFamilySSF1019361.11E-1031107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.6745109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEKRDEILKG YNTFTRVWIK NSSANQNYNF EAYFPAISQP EGLPLKVQDA SGKEWVFQFR  60
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRIDPEGK LVMGFRKASS VSAEQDTQTG  120
KAGNGFSTST EGNNKNSAAD LNANLPLRPL KGSTESRNSI NTADQATWSK FDRSGFIQKD  180
GPTARSSHGP SKRKGSNLGS KSKRLRIENE DSMELKVTWE EAQELLRPPP NHVPTIVVID  240
GIEIEEYEFS CKRFPLDAFH DIGEASKGVA IKGLVDGNIP FRAFSVNFGI KYENKEDRYP  300
CILVIGGEES CMVNMSSCSS AQELSLEQLA NLIPIKTGGI FDALFKYKNT LIPFWCLVLP  360
RGASKRSKVK VEADNIEVSD GLDTLANLAI LGEGEALPTS SQPTTKHPRH RPGCTCIVCI  420
QPPSGKGPKH KQTCTCNVCL TVKRRFRTLM LRREKRQSEK EAEAARKQQQ LIQSPEMLPP  480
LGSDPSSAGP SISSSPQKAV VNNDGVEEGS EYRKTSSSPL KAQIDLNIQP EREEEPSPKS  540
DAGGMMKLLR DAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-413111547131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442455KRRFRTLMLRREKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806760.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G41e-169Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2H3Z1B30.0A0A2H3Z1B3_PHODC; B3 domain-containing protein Os07g0563300-like
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-92HSI2-like 1