PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s858871g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 944aa    MW: 105555 Da    PI: 6.7077
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s858871g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23127228199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  PDK_30s858871g002 127 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI-- 214
                        99*****************************85545444..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  PDK_30s858871g002 215 WNENNQLLLGIRRA 228
                        7888889****997 PP

2Auxin_resp1219.3e-40253336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  PDK_30s858871g002 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                        79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-42121241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-21126227No hitNo description
SMARTSM010191.3E-24127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534127229IPR003340B3 DNA binding domain
PfamPF065071.9E-34253336IPR010525Auxin response factor
Gene3DG3DSA:1.25.10.104.3E-7526660IPR011989Armadillo-like helical
SuperFamilySSF542778.5E-7805886No hitNo description
PfamPF023096.4E-6806897IPR033389AUX/IAA domain
PROSITE profilePS5174521.79812896IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MRLSTSGLPQ QTQEGEQKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDAHIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSLEEQKDL YLPAELGTLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRSAE KVFPPLDFSQ QPPVQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SCDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSAFP LRLKRPWPSG LPSLHGGKDD EIGLNLPPMW LRDGDHGLPS LSFQGLGVTP  420
WMQPRLNASM LGLQPDMHQA MAAAAQQEMR TMDPSKQTSA ILQFQPPQSL TGRSTLLASQ  480
ILQQMQPNSQ QALLQTIQEN QGQNQTRCQF SQHQLQHCNS FGDQDQQQQQ LQPPLIQQQQ  540
PHQRLQQQQQ QQLQQQQQQQ QLQQRQHQQP QQQQIHQQHQ QSQQHQQIQQ THLCNLQQIP  600
NVVSSLSQLA STSQSPSSLQ TLSSFCQQQT FPGTTNMNPA SMSGVSPLHS ILRSFSPEET  660
SNILNFPRTS SVSTSGTWSS KRLAVESMLP SGTQCMQPQV EQLDQQSNIS QHSVTLPPFP  720
GKDCLLDQEC NTDPQNHLLF GVHIDSSPLL MQNGMRNLRS VGSETDSTAM PFLTAAGTDF  780
PLNQVLTSSS CAEEPGLLQS SENGVHVNPQ NGTFVKVYKS GSFGRSLDIT RFNNYPELRS  840
ELGRLFGLEG QLEDPMRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWCIK ILAPQEVQQM  900
GKGGELPSAA PSKRLPGSGC DGYASRQDSR NMSNGIASVM PLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794474.10.0auxin response factor 17
RefseqXP_026661767.10.0auxin response factor 17
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2H3Y7900.0A0A2H3Y790_PHODC; Auxin response factor
STRINGXP_008794474.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]