PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s857931g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 242aa    MW: 26132.2 Da    PI: 8.866
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s857931g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16138172133
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                        C nCgt+k  Tp++Rrgp g+++LCnaCGl+++ k
  PDK_30s857931g001 138 CLNCGTSKdsTPMMRRGPAGPRSLCNACGLMWANK 172
                        99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.2E-10106137IPR010402CCT domain
SuperFamilySSF577161.05E-10130177No hitNo description
SMARTSM004014.3E-8132191IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.682132167IPR000679Zinc finger, GATA-type
CDDcd002021.70E-10137172No hitNo description
Gene3DG3DSA:3.30.50.107.5E-14137172IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.3E-14138172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440138165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQLQAGCQYD MACGGLVIHE GLGMFTVAIS SPTLSCINAF CLVAFYACIV FASIARQLPI  60
PSVRAVLLLL GGQEELPSDV TGMTGPFHPD QRDLNNASRS ANNPHRLASL MRYREKRKSL  120
CFNKKILYTV RKEVASSCLN CGTSKDSTPM MRRGPAGPRS LCNACGLMWA NKPTRVQDSF  180
KIKGTLRSLP PVSPSGTYDM SINQMEQSDA NISVVGSNSH MFSATSSGHG SIVMAESGMP  240
WT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805211.11e-101GATA transcription factor 28-like
TrEMBLA0A2H3YXC41e-99A0A2H3YXC4_PHODC; GATA transcription factor 28-like
STRINGXP_008805211.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3754933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-34ZIM-like 1