PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s854671g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LFY

Protein Properties

Length: 272aa MW: 30889.8 Da PI: 8.2774

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s854671g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	375.1	1.1e-114	27	243	148	368
FLO_LFY 148 glseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepg 239 glseepvq+e+eaa+s ge ++ +aa++ + +++++++k+k+k+k+++e++ ee+ed + +e +egs ++ erqrehPfivtepg PDK_30s854671g005 27 GLSEEPVQQEREAAASVGEAAA----AAANNDGRAKQRRSTTKSKAKKKRSSEEEGEEEEDGWGTGSEGSEGSERSVVERQREHPFIVTEPG 114 89********9999777732....2233233344555555667888888887777888888888888888888899********** PP FLO_LFY 240 evargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkerge 331 evar+kknGLDYLf+LyeqCr+fLlqvq++ak+rG+kcPtkvtnqvfryakkagas inkPkmrhYvhCYalhcLdeeasnalrra+kerge PDK_30s854671g005 115 EVARAKKNGLDYLFHLYEQCRHFLLQVQSLAKDRGDKCPTKVTNQVFRYAKKAGASCINKPKMRHYVHCYALHCLDEEASNALRRAYKERGE 206 **************************************************************************************** PP FLO_LFY 332 nvGawrqacykplvaiaarqgwdidavfnahprLsiW 368 nvGawrqacykplvai+ar+gwdidavfnahprLsi PDK_30s854671g005 207 NVGAWRQACYKPLVAISARHGWDIDAVFNAHPRLSIC 243 *********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	6.0E-119	27	243	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDMERYLIPI VFDFGFSDIS NFWPPTGLSE EPVQQEREAA ASVGEAAAAA ANNDGRAKQR 60 RSTTKSKAKK KRSSEEEGEE EEDGWGTGSE GSEGSERSVV ERQREHPFIV TEPGEVARAK 120 KNGLDYLFHL YEQCRHFLLQ VQSLAKDRGD KCPTKVTNQV FRYAKKAGAS CINKPKMRHY 180 VHCYALHCLD EEASNALRRA YKERGENVGA WRQACYKPLV AISARHGWDI DAVFNAHPRL 240 SICVLLLRQD WSFQRQIERQ PGLKNYIVIS IV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2vy1_A	5e-96	100	242	3	145	PROTEIN LEAFY
2vy2_A	5e-96	100	242	3	145	PROTEIN LEAFY
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797158.1	1e-155	floricaula/leafy homolog
Swissprot	O04064	1e-100	FLLH_POPTR; Floricaula/leafy homolog
Swissprot	Q40504	1e-100	FL1_TOBAC; Floricaula/leafy homolog 1
TrEMBL	A0A2H3YDG5	1e-154	A0A2H3YDG5_PHODC; floricaula/leafy homolog
STRING	XP_008797158.1	1e-154	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8269	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61850.1	2e-91	floral meristem identity control protein LEAFY (LFY)

Publications ? help Back to Top
Tuskan GA, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 2006. 313(5793): p. 1596-604 [PMID:16973872]