PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s853851g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18206.7 Da PI: 6.4958 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.5 | 1.2e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrr+C+kdC++ap fp+++p++fa+vh++FGasnv+k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq +++ql+ PDK_30s853851g003 6 PCASCKLLRRRCTKDCFFAPFFPSDDPHRFAIVHRVFGASNVSKMLQELPVHQRADAVRSLVYEADARMRDPVYGCVGAISYLQDKVSQLQM 97 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e PDK_30s853851g003 98 QLAAAQAE 105 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.228 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGGSSPCASC KLLRRRCTKD CFFAPFFPSD DPHRFAIVHR VFGASNVSKM LQELPVHQRA 60 DAVRSLVYEA DARMRDPVYG CVGAISYLQD KVSQLQMQLA AAQAEILCIP MQQEPPEATD 120 QQREPDDKPY LTQNNLNGMP QLMNYGSSSN AAQEHLKGES LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-46 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808032.1 | 1e-121 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-69 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2H3Z4N5 | 1e-119 | A0A2H3Z4N5_PHODC; LOB domain-containing protein 12-like | ||||
STRING | XP_008808032.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-63 | LBD family protein |
Publications ? help Back to Top | |||
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