PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s853591g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 515aa MW: 55286.2 Da PI: 8.253

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s853591g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	169	228	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ PDK_30s853591g002 169 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 228 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.1E-32	154	230	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-27	162	230	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	164	230	IPR003657	WRKY domain
SMART	SM00774	2.2E-36	169	229	IPR003657	WRKY domain
Pfam	PF03106	7.4E-27	170	228	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MGEVREENER LKTILARIVK DYQSLQTHFF DIVQQEQAKK PVETPPAPNE VEEPELVSLS 60 LGTSSSGHKK EEKVSTDKSK EKSHEQIEGG LTLGLDCKFE GSGTGTNEPG SNLSPGNSFE 120 EPKEAKPGEP WPPSKILKNL RNGDDEVSQQ PFVKKARVSV RARCDAPTMN DGCQWRKYGQ 180 KIAKGNPCPR AYYRCTVAPA CPVRKQVQRC AEDMSILITT YEGTHNHPLP YSATAMASTT 240 SAAACMLMSG SSASRPTIGS LATSSTVTTT TDARLHGLNF SLSGNSRPGH FYLPNPSISS 300 TPCHPTITLD LTAPPSSTSQ PSHFSRFSSN FASIPRYSST GFSFSSSESD TIPTSWSNSY 360 LNHGNQPYNK SLVGSLNLGR QPQDPFYQSY LNKATNPSAP SPSQNSLTDT ITKAITSDPS 420 FQSVIAAAIT SYVGAQGGRG ESSGHGLKWG ERFNSVPHYS GAATGNACAS SYLTRSTASS 480 SNPQQGNLMF LQPSMGFPGS KSASASPVEN RENTN

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MGEVREENER LKTILARIVK DYQSLQTHFF DIVQQEQAKK PVETPPAPNE VEEPELVSLS  60
LGTSSSGHKK EEKVSTDKSK EKSHEQIEGG LTLGLDCKFE GSGTGTNEPG SNLSPGNSFE  120
EPKEAKPGEP WPPSKILKNL RNGDDEVSQQ PFVKKARVSV RARCDAPTMN DGCQWRKYGQ  180
KIAKGNPCPR AYYRCTVAPA CPVRKQVQRC AEDMSILITT YEGTHNHPLP YSATAMASTT  240
SAAACMLMSG SSASRPTIGS LATSSTVTTT TDARLHGLNF SLSGNSRPGH FYLPNPSISS  300
TPCHPTITLD LTAPPSSTSQ PSHFSRFSSN FASIPRYSST GFSFSSSESD TIPTSWSNSY  360
LNHGNQPYNK SLVGSLNLGR QPQDPFYQSY LNKATNPSAP SPSQNSLTDT ITKAITSDPS  420
FQSVIAAAIT SYVGAQGGRG ESSGHGLKWG ERFNSVPHYS GAATGNACAS SYLTRSTASS  480
SNPQQGNLMF LQPSMGFPGS KSASASPVEN RENTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	156	230	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146231	1e-34	BT146231.1 Lotus japonicus clone JCVI-FLLj-21B16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017701724.1	0.0	probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-119	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2H3ZZC5	0.0	A0A2H3ZZC5_PHODC; probable WRKY transcription factor 72 isoform X1
STRING	XP_008809713.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-85	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]