PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s847891g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 38105.1 Da PI: 8.588 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.4 | 1.1e-14 | 225 | 258 | 1 | 32 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ PDK_30s847891g001 225 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWAN 258 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.095 | 23 | 58 | IPR010399 | Tify domain |
SMART | SM00979 | 3.0E-9 | 23 | 58 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.5E-13 | 24 | 57 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 8.75 | 84 | 126 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-9 | 84 | 111 | IPR010402 | CCT domain |
SMART | SM00401 | 4.8E-6 | 219 | 273 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-9 | 221 | 264 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-12 | 224 | 259 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.98E-11 | 225 | 274 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 225 | 252 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-12 | 225 | 259 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MSTTAADLPM NHDDGVDAAV PLVSPTSNQL TLLYQGEVYV FESVSPEKVQ AVLLLLGGCE 60 MPVLAGMALP FLQDDRHTTM PAKRIASLIR FREKRKERCF DKKIRYNVRK EIGLLLDPDL 120 THGFKNQVSP GLTGQNEVAN DELNPRKSGV TKLEVQYAIW FRQNDAKNAE RICYNVQHSQ 180 GTRMKRRKGQ FAGKANPEDE ASASSSCDPA QNFSYDDNPR ETKNCQNCGI SEKMTPAMRR 240 GPAGPRSLCN ACGLMWANKP FVQGIQNRYR EPYQYVTGSK WYSTCPISSQ ASNTFSDSQP 300 RYHLNPCRTG WYGLVPFSSD WYGLANIDTM VRHTGPNCTV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775860.1 | 6e-73 | GATA transcription factor 19-like | ||||
Swissprot | A2XKR7 | 4e-35 | GAT18_ORYSI; GATA transcription factor 18 | ||||
TrEMBL | A0A2H3WZ28 | 1e-71 | A0A2H3WZ28_PHODC; GATA transcription factor 19-like | ||||
STRING | XP_008775860.1 | 2e-72 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-30 | ZIM-like 1 |