PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s847641g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 1082aa MW: 115605 Da PI: 6.2424

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s847641g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	1062	1082	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr f+++G+Ck G++C+++H+ PDK_30s847641g003 1062 ICR-FHENGHCKKGASCNYIHS 1082 688.9999*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	2.35E-17	173	230	IPR003169	GYF domain
CDD	cd00072	4.59E-15	178	233	No hit	No description
PROSITE profile	PS50829	15.455	178	232	IPR003169	GYF domain
SMART	SM00444	3.6E-19	179	234	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	2.6E-18	180	231	IPR003169	GYF domain
Pfam	PF02213	5.9E-14	180	226	IPR003169	GYF domain
PROSITE profile	PS50103	13.563	1057	1082	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-4	1059	1082	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence Send to blast
MPEERNRRLN GVPEIHADPN MSPDYETAEE EEEPDSKRQE HADHYSRSRA SALLRKGREV 60 TSPGRGISIS GDNWNGSRKN SNIMESNRSI LREGASSKSA SMVGITNELS WKQGNDVHET 120 RSWEPPKMPT NATGLETGAW NNNQHGLRPA QSSGVQPETP TASLSTGVVV PSNANESEKI 180 WRYQDPSGKT QGPFSMMQLR KWSTTGYFPT NLRIWRTFEK QEDSILLTDA LIGKFRNDLP 240 QHEPAHNNLT DNKQNIANWK ASQNDANLST PGINESAKAD RLVTRPSAWS APKTEVVNPN 300 EGGLGTSLRD QGSSKGINAW PGQMQGWNGE RTAASFTGSP YQPLSHPSRG SRGGNSGRWN 360 RSQDHGSNWG SNTPMGSQPT GQVYDKPHPH WSSSSQQSSE DMSKVQTSEF PNQWKNDSYN 420 LPTAPQSGSR DSTGDQGALN KSFPSSASVQ PMIYGWGTTP SSSEAHRSFY ASGMSNKITM 480 LDSVGEWGSS AVTPMLKQSV TADGGNPYPA AMSSMPNAAE VVETMGSSQL PDKVDDRGNF 540 QISSQQKIPP VHESSMTLEN QSSLELPCRD EVISPTTDTQ LAGGLDKNQC PQSDDARPAP 600 RSEQVSGDIL SSGCGETVPS QLNDRQDNRV VWQGQPDLGK KWAEAHDRLA DKRKSLVDGR 660 GSDPGSVVDA HDTNLITESY ALEPKSAQQS EISSGPNLGS ESLGWTSHSA PKQKPDSSCP 720 IPAFAENRSE QNQSQRPESS LAGPECINSH NSGIPSDGKS TEHLMPAPAI KMISSEWSGS 780 GVNSNVGNNQ NVQFVSLDGS KPLASSQCEA SAELAQPSNA GLSAAAHGQS NFWGVAPQNP 840 NTGTVSQGNA NMNWATTIQG NMNMGWGLVA QSNINVSQGT PAQGFANLNM GLGTPPQANM 900 VVNAGWVPAA PGNTIGNPAW GTPFQGNPNP GTGWAAHVQG SMSVNPGWGT VPQGNTNSNP 960 RLVTLPSGNT NQNASWGTPT QGNMDMNSNS TWGSGQGNMN PTWDPSVGDP NSWNTPQAQA 1020 GDRHSGQSGS DTGNAAGRPM WNRIQSGGGG GSSRPPRGQR GICRFHENGH CKKGASCNYI 1080 HS

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence Send to blast

MPEERNRRLN GVPEIHADPN MSPDYETAEE EEEPDSKRQE HADHYSRSRA SALLRKGREV  60
TSPGRGISIS GDNWNGSRKN SNIMESNRSI LREGASSKSA SMVGITNELS WKQGNDVHET  120
RSWEPPKMPT NATGLETGAW NNNQHGLRPA QSSGVQPETP TASLSTGVVV PSNANESEKI  180
WRYQDPSGKT QGPFSMMQLR KWSTTGYFPT NLRIWRTFEK QEDSILLTDA LIGKFRNDLP  240
QHEPAHNNLT DNKQNIANWK ASQNDANLST PGINESAKAD RLVTRPSAWS APKTEVVNPN  300
EGGLGTSLRD QGSSKGINAW PGQMQGWNGE RTAASFTGSP YQPLSHPSRG SRGGNSGRWN  360
RSQDHGSNWG SNTPMGSQPT GQVYDKPHPH WSSSSQQSSE DMSKVQTSEF PNQWKNDSYN  420
LPTAPQSGSR DSTGDQGALN KSFPSSASVQ PMIYGWGTTP SSSEAHRSFY ASGMSNKITM  480
LDSVGEWGSS AVTPMLKQSV TADGGNPYPA AMSSMPNAAE VVETMGSSQL PDKVDDRGNF  540
QISSQQKIPP VHESSMTLEN QSSLELPCRD EVISPTTDTQ LAGGLDKNQC PQSDDARPAP  600
RSEQVSGDIL SSGCGETVPS QLNDRQDNRV VWQGQPDLGK KWAEAHDRLA DKRKSLVDGR  660
GSDPGSVVDA HDTNLITESY ALEPKSAQQS EISSGPNLGS ESLGWTSHSA PKQKPDSSCP  720
IPAFAENRSE QNQSQRPESS LAGPECINSH NSGIPSDGKS TEHLMPAPAI KMISSEWSGS  780
GVNSNVGNNQ NVQFVSLDGS KPLASSQCEA SAELAQPSNA GLSAAAHGQS NFWGVAPQNP  840
NTGTVSQGNA NMNWATTIQG NMNMGWGLVA QSNINVSQGT PAQGFANLNM GLGTPPQANM  900
VVNAGWVPAA PGNTIGNPAW GTPFQGNPNP GTGWAAHVQG SMSVNPGWGT VPQGNTNSNP  960
RLVTLPSGNT NQNASWGTPT QGNMDMNSNS TWGSGQGNMN PTWDPSVGDP NSWNTPQAQA  1020
GDRHSGQSGS DTGNAAGRPM WNRIQSGGGG GSSRPPRGQR GICRFHENGH CKKGASCNYI  1080
HS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812561.1	0.0	zinc finger CCCH domain-containing protein 19-like isoform X1
TrEMBL	A0A2H3ZEH7	0.0	A0A2H3ZEH7_PHODC; zinc finger CCCH domain-containing protein 19-like isoform X1
STRING	XP_008812560.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7179	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	6e-32	nucleic acid binding;zinc ion binding;DNA binding