PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s846061g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 172aa MW: 19369.8 Da PI: 10.4059 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.2e-20 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a ++k++g PDK_30s846061g001 25 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 74 6********.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.131 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-38 | 25 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.80E-32 | 25 | 83 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-23 | 25 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-33 | 25 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-12 | 26 | 37 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 26 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-12 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
GSTILKHEEY DGPVAKSAKR KRKNQYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE 60 AARAYDAEAR KIRGKKAKVN FPDEVRPSAQ KRSQKAAAPK APEPNQPGIL KFNQPLSYLD 120 EPHQDLYSSF DFIEEKQPIK QAENLSAFPA FPARNPAPPA EGPGMNLYSD QG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 24 | 84 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784363.1 | 1e-121 | ethylene-responsive transcription factor 1-like | ||||
Refseq | XP_026658873.1 | 1e-121 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-48 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2H3XIM2 | 1e-120 | A0A2H3XIM2_PHODC; ethylene-responsive transcription factor 1-like | ||||
STRING | XP_008784363.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 4e-31 | related to AP2 12 |