PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s845051g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

YABBY

Protein Properties

Length: 229aa MW: 24838.1 Da PI: 4.7287

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s845051g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	41.8	4e-13	197	229	102	134
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfik 134 ++ne+e p++p v++PPekrqr+Psaynrfik PDK_30s845051g001 197 EDNEKEGPPKTPVVNKPPEKRQRAPSAYNRFIK 229 5677888899999*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-9	196	229	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRQGYSDNAA RSEQLGCEIG KGAGGGSGTP SGMPLRGRGV GAAFKVCSPG ANCKEKGEVG 60 VRTDGNPSVF RDAPKEEESA GEMGEAFVAG ESDPPSREDQ SSGAEMPSSF AQCPFLEPST 120 SPVWDRPRQS RQRPWNEGRN LRRRLDAVSF EDGRGGDEWR VIAEKTTSFC SSYELQEKHE 180 ECGDAPPRAG EDGDDEEDNE KEGPPKTPVV NKPPEKRQRA PSAYNRFIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-07	YABBY family protein