PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s844971g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 259aa    MW: 29424.2 Da    PI: 5.9206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s844971g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  PDK_30s844971g007 14 KGPWTSEEDQILITYIQRYGHANWRALPKQAGLSRCGKSCRLRWINYL 61
                       79********************************************97 PP
2Myb_DNA-binding49.59.9e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++T+eE+e ++ ++++ G++ W++Ia++++ gRt++++k+ w++
  PDK_30s844971g007  67 RGNFTKEEEETIISLHEMIGNR-WSAIAARLP-GRTDNEIKNVWHT 110
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.758961IPR017930Myb domain
SuperFamilySSF466893.0E-3110108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001671.85E-101661No hitNo description
PROSITE profilePS5129424.11662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2665116IPR009057Homeodomain-like
SMARTSM007171.7E-1366114IPR001005SANT/Myb domain
PfamPF002491.1E-1467110IPR001005SANT/Myb domain
CDDcd001679.61E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTSE EDQILITYIQ RYGHANWRAL PKQAGLSRCG KSCRLRWINY  60
LRPDIKRGNF TKEEEETIIS LHEMIGNRWS AIAARLPGRT DNEIKNVWHT RLKKRVKPNQ  120
VAQEPKIKTH SDAFKHTPLV HPRFDDPRLL PASQEQSYSD FSCTATDSYT MSGENTNSVA  180
VKEDSFCSEE FPEIDESFWS EVLSMDSRAA PVDLTALQGP ASGPLGEHFG SFGASDNDDM  240
DFWLRVFLEA GDLQVLPEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785342.10.0transcription factor MYB30-like
SwissprotQ6K1S63e-87MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A2H3XKY80.0A0A2H3XKY8_PHODC; transcription factor MYB30-like
STRINGXP_008785342.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-79myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]