PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s844271g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 698aa MW: 79543.5 Da PI: 7.2718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s844271g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.6e-24	85	172	2	89
FAR1 2 fYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA+++GF r+ +s++sk ++ ++++fvCskeg +++ + + +++r+r + r gCka+++v ++ +++w+v+kle+ HnH+l PDK_30s844271g003 85 FYNDYARRLGFPFRVGRSRRSKGvEEVLIMKRFVCSKEGIYRKKPSGEGTRKRERISMREGCKAMMEVIRD-SDRWVVSKLETAHNHHL 172 9******************761556799*******99999999***************999.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-20	85	172	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-30	265	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.127	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.8E-9	554	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-6	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MENTRAEGDD LMEDYVECLM SLDTNTRPGE NDNTILPVPA EEPTSIPVGI TEQPPTKKIA 60 PVGTEEPKEP TLGMEFESDE AAKAFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS 120 KEGIYRKKPS GEGTRKRERI SMREGCKAMM EVIRDSDRWV VSKLETAHNH HLGTSSRVGY 180 LRARGFIDTC DKARIVASDA MTLLRQNAFG ERGDAQGLVD YFKRMQAENP AFFYAIQVDS 240 NSCVTNSFWA DAKARSAYNY FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QPVIFGCALL 300 IDETEYSFVW LFETWLAAMG GRPPVSLVTD QNRAMTAAIA KVFPNTRHRF CKWLILSRSK 360 QKLAHVYSAH PTLRGELEKC VIESETVQAF EMAWASIIDK YDLRKNTWLQ ALFNIRHRWI 420 PLYLKDTFFA ELSPTQKLET TNDFYKKYFN TKTALKVFLT QFELAMASRY EDEAQADADT 480 MCTKPVLKTA SPIEKQAATI YTRAVFNKFQ QEFVESLGYN VYKIKDGTVS KFSVARDEDS 540 LETFIVTYNS TKKTATCTCR NFEFSGILCQ HILGVFLMVD LHMLPEEYFL KRWTRHAKSC 600 AILDEHSVEL QSSSQESITS RYNDLCRDAI KCAEKGATSI EIYKAAKDVF QKAFTDIIAF 660 EKNAGRGAQR DAININEEIA IDDAMNGQAL QDPERKAT

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MENTRAEGDD LMEDYVECLM SLDTNTRPGE NDNTILPVPA EEPTSIPVGI TEQPPTKKIA  60
PVGTEEPKEP TLGMEFESDE AAKAFYNDYA RRLGFPFRVG RSRRSKGVEE VLIMKRFVCS  120
KEGIYRKKPS GEGTRKRERI SMREGCKAMM EVIRDSDRWV VSKLETAHNH HLGTSSRVGY  180
LRARGFIDTC DKARIVASDA MTLLRQNAFG ERGDAQGLVD YFKRMQAENP AFFYAIQVDS  240
NSCVTNSFWA DAKARSAYNY FGDAVTFDTT YKKNKYMMPF VTFSGVNHHL QPVIFGCALL  300
IDETEYSFVW LFETWLAAMG GRPPVSLVTD QNRAMTAAIA KVFPNTRHRF CKWLILSRSK  360
QKLAHVYSAH PTLRGELEKC VIESETVQAF EMAWASIIDK YDLRKNTWLQ ALFNIRHRWI  420
PLYLKDTFFA ELSPTQKLET TNDFYKKYFN TKTALKVFLT QFELAMASRY EDEAQADADT  480
MCTKPVLKTA SPIEKQAATI YTRAVFNKFQ QEFVESLGYN VYKIKDGTVS KFSVARDEDS  540
LETFIVTYNS TKKTATCTCR NFEFSGILCQ HILGVFLMVD LHMLPEEYFL KRWTRHAKSC  600
AILDEHSVEL QSSSQESITS RYNDLCRDAI KCAEKGATSI EIYKAAKDVF QKAFTDIIAF  660
EKNAGRGAQR DAININEEIA IDDAMNGQAL QDPERKAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792111.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026661102.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3Y280	0.0	A0A2H3Y280_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008792107.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-175	FAR1-related sequence 5