PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s842421g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRF

Protein Properties

Length: 551aa MW: 59739.9 Da PI: 6.7115

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s842421g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.7e-24	177	221	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PDK_30s842421g002 177 DAEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 221 79****************************************985 PP
2	QLQ	56.1	1.1e-19	107	143	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy++an+P+P+ Ll i++ PDK_30s842421g002 107 GPFTPSQWLELEQQALIYKYMNANAPIPASLLISIRR 143 59******************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-11	107	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.373	108	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.0E-14	108	141	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.202	177	221	IPR014977	WRC domain
Pfam	PF08879	1.2E-20	178	220	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MDGLVGASSL CGGVFSSPQA CSDHETNKKN GFFRSGLQKQ GRPCGPEEHD WRYLKVARTE 60 VPSLSPDGEQ MLSFSSSKPD AFLFSSEPRF ASTPSASSYV GNAGARGPFT PSQWLELEQQ 120 ALIYKYMNAN APIPASLLIS IRRSLSSSRF TSFSAGSLGP NTFGWGSLHL GLSGNADAEP 180 GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQNGHAAKAM PVIAPTPTAP 240 AVSCSGSSNS FTVAQQQINN GKPSITCSSS TQFDRVLANK ELDNSHDLSM LNSVNSEPTE 300 TLLPIPEQHN PFEESPSRAK YVLVSSDSPF KPPSNSYLGN DNFVSSTEFN DLDPPTNPLR 360 HFIDEWHRKC SNSSTITWPE REMTSDQTQL SISIPVASSD FSSSSSPTHD KYTPSPLKLS 420 LDSGPDSTNL GVGNLPNYGN QRQASWVPSS WESSMGGPLG EVLNNTCITL MDHNKNCSSL 480 NLMPNGDDFS PWLRSSPTGV LHKTNFGSLS SSTRSSPIAE NHNHNVQDSI SSLHENLLGS 540 DLVDPSTITS S

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MDGLVGASSL CGGVFSSPQA CSDHETNKKN GFFRSGLQKQ GRPCGPEEHD WRYLKVARTE  60
VPSLSPDGEQ MLSFSSSKPD AFLFSSEPRF ASTPSASSYV GNAGARGPFT PSQWLELEQQ  120
ALIYKYMNAN APIPASLLIS IRRSLSSSRF TSFSAGSLGP NTFGWGSLHL GLSGNADAEP  180
GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQNGHAAKAM PVIAPTPTAP  240
AVSCSGSSNS FTVAQQQINN GKPSITCSSS TQFDRVLANK ELDNSHDLSM LNSVNSEPTE  300
TLLPIPEQHN PFEESPSRAK YVLVSSDSPF KPPSNSYLGN DNFVSSTEFN DLDPPTNPLR  360
HFIDEWHRKC SNSSTITWPE REMTSDQTQL SISIPVASSD FSSSSSPTHD KYTPSPLKLS  420
LDSGPDSTNL GVGNLPNYGN QRQASWVPSS WESSMGGPLG EVLNNTCITL MDHNKNCSSL  480
NLMPNGDDFS PWLRSSPTGV LHKTNFGSLS SSTRSSPIAE NHNHNVQDSI SSLHENLLGS  540
DLVDPSTITS S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	2e-36	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796979.1	0.0	growth-regulating factor 6-like isoform X1
Swissprot	Q6AWY3	1e-105	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3YDE1	0.0	A0A2H3YDE1_PHODC; growth-regulating factor 6-like isoform X1
STRING	XP_008796979.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-66	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]