PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s840681g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 625aa    MW: 70047.5 Da    PI: 8.7689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s840681g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10491024499
                        -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         s +v l    +++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  PDK_30s840681g002  49 HSEQVSLYNYCQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNENNQLLLGIRRA 102
                        555556633446678*************************..7888889****997 PP
2Auxin_resp769.6e-26127186159
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr 
  PDK_30s840681g002 127 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRS 186
                        79*********************************9789*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.09E-635101No hitNo description
PROSITE profilePS508638.82546103IPR003340B3 DNA binding domain
PfamPF023623.4E-848102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-1552116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-1358130IPR015300DNA-binding pseudobarrel domain
PfamPF065071.5E-20127185IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MRLSTSGLPQ QTQEGEQKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVSLYNYCQ  60
PKRHLLTTGW SVFVSAKRLI AGDSVLFIWN ENNQLLLGIR RANRPQTVMP SSVLSSDSMH  120
IGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM RFRMLFETEE  180
SSVRRSPLMW LRDGDRGMPS LNFQGLGVTP WIQPRLNASM LGLQPDMYQA VAAAALQEMR  240
TQLQPALLQQ KQQQQPQQQQ HQQLQQQQQQ QLQQQQQQHQ QSQQQQIHQQ KQQHQQSQQQ  300
QIHHQQQQHL PQQQHQQSQQ QQIHQQLRQQ HQQSRQPQHQ QIQQTHLSNH QQVPNAVSSL  360
SQLASTSQSL SSSLQTISSF CRQQNFPDIN INPASTSDVS PLHNILRSSF SPEETPNILN  420
LPRTSSLSTS HNILRSSFSP DETPNILNLP RTSSLSTSVT WPSKRLAVES VLPAESQGLQ  480
SQVAQLGQQS NISQQSVTLP PFPGRDYSLD QECNTDAQNN LLFGAHIDSS SLLMQNGMPN  540
LRSVGSGTDS TAMPFLTAAG TDFPLNQALT SSNCIEEPGF LQPPENVGHM NPQNGTFVKV  600
TNYLHPSMVI VLIYFLSGSY LSKYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-4960211217385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109211.11e-147auxin response factor 17-like
SwissprotQ653U33e-69ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A199V3781e-146A0A199V378_ANACO; Auxin response factor
STRINGGorai.009G152700.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.23e-68auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]