PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s840531g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 459aa    MW: 50947.2 Da    PI: 5.5181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s840531g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-18128174148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEd ll+++v+q+G g W+ Ia+++  gR +kqc++rw+++l
  PDK_30s840531g001 128 KGQWTAEEDSLLIRLVEQHGVGKWSQIAKKLV-GRIGKQCRERWHNHL 174
                        799*****************************.*************97 PP

2Myb_DNA-binding591.1e-18180222145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +++W++eE+ llv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+
  PDK_30s840531g001 180 KNPWSEEEERLLVEAHKKVGNR-WAEIAKQIP-GRTENSIKNHWN 222
                        689*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.152123178IPR017930Myb domain
SuperFamilySSF466891.11E-32126221IPR009057Homeodomain-like
SMARTSM007178.3E-18127176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-28129181IPR009057Homeodomain-like
PfamPF139215.3E-20131191No hitNo description
CDDcd001671.71E-16131174No hitNo description
PROSITE profilePS5129421.962179229IPR017930Myb domain
SMARTSM007172.4E-18179227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21182227IPR009057Homeodomain-like
CDDcd001671.06E-14182225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAEVVDKISD EISEKAPYYL WPLTPLERFL FGERELHVSK KPTPREANKV VLSSDANAHC  60
GDPLGAIGVL PTGVFPTGVL LDESGFCEGF VGGNDEEVEE GLKCTEAKRR TSISSSSRSY  120
AADIKLVKGQ WTAEEDSLLI RLVEQHGVGK WSQIAKKLVG RIGKQCRERW HNHLRPDIKK  180
NPWSEEEERL LVEAHKKVGN RWAEIAKQIP GRTENSIKNH WNATKRRQNS KRKTKKKASQ  240
AETSQPSILL EYIRSNTSKE TSTTMTTPST TPPNQLKITF PNPSEPMFAC NFSASTTRNM  300
AGEMLAMQNY IDTSCSQQPA SESVLENGLH VKDIQEPRML ESLEFMGMDG DDDEFMGMDG  360
HTFLATPPAP NFLYEKASPP PTGSHDTPMS GGSSLHADTY LSYLLNGPPL TSLSVAESDT  420
SEVLADDVKR DMDLLEMISS SQFSSSQRSC SDGSFTYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-471262282104C-Myb DNA-Binding Domain
1msf_C9e-471262282104C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813555.10.0transcription factor MYB119-like
TrEMBLA0A2H3ZHD40.0A0A2H3ZHD4_PHODC; transcription factor MYB119-like
STRINGXP_008813555.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-60myb domain protein 119