PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s840531g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 459aa MW: 50947.2 Da PI: 5.5181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 128 | 174 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v+q+G g W+ Ia+++ gR +kqc++rw+++l PDK_30s840531g001 128 KGQWTAEEDSLLIRLVEQHGVGKWSQIAKKLV-GRIGKQCRERWHNHL 174 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 180 | 222 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ llv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+ PDK_30s840531g001 180 KNPWSEEEERLLVEAHKKVGNR-WAEIAKQIP-GRTENSIKNHWN 222 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 30.152 | 123 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-32 | 126 | 221 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-18 | 127 | 176 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 129 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.3E-20 | 131 | 191 | No hit | No description |
CDD | cd00167 | 1.71E-16 | 131 | 174 | No hit | No description |
PROSITE profile | PS51294 | 21.962 | 179 | 229 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-18 | 179 | 227 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 182 | 227 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-14 | 182 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MAEVVDKISD EISEKAPYYL WPLTPLERFL FGERELHVSK KPTPREANKV VLSSDANAHC 60 GDPLGAIGVL PTGVFPTGVL LDESGFCEGF VGGNDEEVEE GLKCTEAKRR TSISSSSRSY 120 AADIKLVKGQ WTAEEDSLLI RLVEQHGVGK WSQIAKKLVG RIGKQCRERW HNHLRPDIKK 180 NPWSEEEERL LVEAHKKVGN RWAEIAKQIP GRTENSIKNH WNATKRRQNS KRKTKKKASQ 240 AETSQPSILL EYIRSNTSKE TSTTMTTPST TPPNQLKITF PNPSEPMFAC NFSASTTRNM 300 AGEMLAMQNY IDTSCSQQPA SESVLENGLH VKDIQEPRML ESLEFMGMDG DDDEFMGMDG 360 HTFLATPPAP NFLYEKASPP PTGSHDTPMS GGSSLHADTY LSYLLNGPPL TSLSVAESDT 420 SEVLADDVKR DMDLLEMISS SQFSSSQRSC SDGSFTYLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-47 | 126 | 228 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-47 | 126 | 228 | 2 | 104 | C-Myb DNA-Binding Domain |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008813555.1 | 0.0 | transcription factor MYB119-like | ||||
TrEMBL | A0A2H3ZHD4 | 0.0 | A0A2H3ZHD4_PHODC; transcription factor MYB119-like | ||||
STRING | XP_008813555.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-60 | myb domain protein 119 |