PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s840201g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 347aa    MW: 38069.2 Da    PI: 6.37
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s840201g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19121220198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kvl+ sd+++ grlvlpk +ae++   ++++e+  lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  
  PDK_30s840201g004 121 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-P 210
                        99**************************555566778***************9989999999***9.********************987.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv++ ++
  PDK_30s840201g004 211 EGKLVMGYRK 220
                        7777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-31114230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-21118221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-24119220No hitNo description
PROSITE profilePS5086311.364121222IPR003340B3 DNA binding domain
PfamPF023622.1E-16121220IPR003340B3 DNA binding domain
SMARTSM010192.8E-21121221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MISESLAQAC LSMTLGTSDA ERPLMVLPPA NALAEGGDLN KASSAFQQVQ RARQFLPRLP  60
KAGSGATPEA SKDGFSHMRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDANSTIVPL  120
FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS  180
RMYVLEGVTP CIQSLQLQAG DTVTFSRIDP EGKLVMGYRK ATNTVPLPDS QISAIANSAV  240
GNETFLPGVN ENLPIASGYP GLLLSYHQTD KHGGRPNEGL QLQPVQKRSR NIGAKCRRLL  300
MDSEDALELT LTWEEAQNLL RPAPNSRPSV VMIDDHEIEE YDVSQTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-72992232126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697082.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ6Z3U31e-158Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2H3ZKX80.0A0A2H3ZKX8_PHODC; B3 domain-containing protein Os07g0679700-like isoform X3
STRINGXP_008782658.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-116HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]