PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s837821g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18505.1 Da PI: 9.3665 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.2e-09 | 15 | 38 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ PDK_30s837821g002 15 RWSLIAGRLP-GRTDNEIKNYWNTH 38 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.597 | 1 | 43 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-8 | 12 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-13 | 14 | 40 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.40E-7 | 15 | 39 | No hit | No description |
Pfam | PF00249 | 3.4E-7 | 15 | 38 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MQCLSGTRGY IKHSRWSLIA GRLPGRTDNE IKNYWNTHIR RKLLSRGIDP ATHGPVHAPL 60 SDFTITFAKA EKKDVRILRR DEGKTGSSCS REEESASWRQ YRCPDLNLEL SISPPFQQPA 120 QPIEGERRLC FACSLGLHKS QECKCNGFLG LSAGALDYRA VDMK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788440.1 | 1e-106 | myb-related protein Hv1-like | ||||
Swissprot | P20026 | 3e-41 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A0A2H3XT68 | 1e-105 | A0A2H3XT68_PHODC; myb-related protein Hv1-like | ||||
STRING | XP_008788440.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 8e-31 | myb domain protein 32 |