PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s837411g011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32327.2 Da PI: 6.5109 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G +W++++ + g+ R +k+c++rw +yl PDK_30s837411g011 15 KGLWSPEEDQKLRDYILKHGHSCWSAVPIKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+e+ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl PDK_30s837411g011 68 RGIFSQEEEEIVINLQARLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113 6889******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.178 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.93E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.687 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGCRTCEKPK VNYRKGLWSP EEDQKLRDYI LKHGHSCWSA VPIKAGLQRN GKSCRLRWIN 60 YLRPGLKRGI FSQEEEEIVI NLQARLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKKVINA 120 QGSDPHGSAT KSLEPTNKNL LTQKETNNQI PSSQSLEPPE SSTADSGLSM KHSMEFGSFE 180 GAIHHHFPEV LIADWLSVDQ VIEQGSGIFG GATSTPWNSS NSNVDEVLRP GSSEVVGHSN 240 SDFLGGYGGT GIDGELQAQF EPVSPIPGDA FFDLFTMGKI PGSLDMNHEV IF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 9 | 117 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008780142.1 | 0.0 | transcription repressor MYB6-like | ||||
TrEMBL | A0A2H3X8V0 | 0.0 | A0A2H3X8V0_PHODC; transcription repressor MYB6-like | ||||
STRING | XP_008780142.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-57 | myb domain protein 18 |