PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s836761g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 179aa MW: 19971.1 Da PI: 8.2337 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 148.1 | 1.9e-46 | 2 | 94 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +rf+Pia v+rim+++lP +akis+da+et+qecvse+i f+t+ea+++c+re+rkti+++d++wa+++lGf+dyv+pl+++l++yre eg++ PDK_30s836761g004 2 ERFMPIASVTRIMHRALPLHAKISDDARETIQECVSEYIRFITGEANKRCRREQRKTITAEDVIWAMGKLGFDDYVAPLSLFLQRYRESEGDQ 94 79****************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.4E-32 | 2 | 93 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.0E-42 | 2 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.8E-23 | 4 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.8E-13 | 32 | 50 | No hit | No description |
PRINTS | PR00615 | 5.8E-13 | 51 | 69 | No hit | No description |
PRINTS | PR00615 | 5.8E-13 | 70 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MERFMPIASV TRIMHRALPL HAKISDDARE TIQECVSEYI RFITGEANKR CRREQRKTIT 60 AEDVIWAMGK LGFDDYVAPL SLFLQRYRES EGDQCIGEHF PIVKHRRHPQ MSDTICAPPV 120 LSRPLVICLS TLPLPTPSGL IMPPTAPPPR INHLVDKGSG AGYFLGMHGD GDGAGPVRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-48 | 2 | 89 | 10 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026662837.1 | 1e-127 | nuclear transcription factor Y subunit beta-like | ||||
Swissprot | Q84W66 | 2e-48 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q0IBV7 | 1e-126 | A0A3Q0IBV7_PHODC; nuclear transcription factor Y subunit beta-like | ||||
STRING | XP_008798410.1 | 8e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-51 | nuclear factor Y, subunit B6 |