PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s829961g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 319aa MW: 34955.7 Da PI: 7.5509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s829961g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	7.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g+ R++k+c++rw +yl PDK_30s829961g003 14 KGPWTPEEDQKLIQYIQKHGHGSWRALPKLAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l PDK_30s829961g003 67 RGKFSSEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.154	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.73E-13	16	61	No hit	No description
PROSITE profile	PS51294	26.621	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.83E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLIQYIQ KHGHGSWRAL PKLAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SSEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIRVG 120 IDPMTHRPRT DLFATLPQLM ALASLGGLMD CRSLDDQLRA EAARLANLQC LQYFLQSSAA 180 ISNSSNGNTL TGEMDAMNLS NQLPLNAVVS NPSHNPFTVV NAQTRLHHLS EFSCSLEQPL 240 GSDAREGSTF MDFSQGESKG LATPVVSPPP PPPPSTLPPL AVASMGSGDA CSSSSHGGSV 300 TTTFWPDLLF DEPLMSEFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-31	12	116	2	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-31	12	116	2	105	C-Myb DNA-Binding Domain
1msf_C	4e-31	12	116	2	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782327.1	0.0	transcription factor MYB93-like
Swissprot	Q9S9Z2	1e-111	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2H3XDS5	0.0	A0A2H3XDS5_PHODC; transcription factor MYB93-like
STRING	XP_008782327.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-105	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]