PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s826801g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 400aa    MW: 45512.9 Da    PI: 7.774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s826801g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-175197148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT +Ed+ l +av+q+ g++Wk Ia+ ++ gRt+ qc  rwq++l
  PDK_30s826801g002 51 KGGWTDDEDDMLTEAVRQFDGKNWKQIAELFP-GRTDIQCFRRWQNVL 97
                       688*****************************.*************86 PP
2Myb_DNA-binding30.86.8e-10176207134
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 
                        r++WT eE+e lv+ ++ +G++ W+ Ia++++ g
  PDK_30s826801g002 176 RDAWTREEEEVLVRTHQIYGNK-WTEIAKYLP-G 207
                        789*******************.********9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.77946101IPR017930Myb domain
SuperFamilySSF466897.89E-2149137IPR009057Homeodomain-like
SMARTSM007175.3E-165099IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2353118IPR009057Homeodomain-like
CDDcd001671.62E-135497No hitNo description
PfamPF139219.0E-1654113No hitNo description
PROSITE profilePS500906.19198170IPR017877Myb-like domain
SMARTSM007170.67102172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-11119181IPR009057Homeodomain-like
SuperFamilySSF466893.11E-13164207IPR009057Homeodomain-like
PROSITE profilePS5129413.746171214IPR017930Myb domain
SMARTSM007170.0037175220IPR001005SANT/Myb domain
PfamPF002491.1E-7176207IPR001005SANT/Myb domain
CDDcd001672.87E-5178207No hitNo description
Gene3DG3DSA:1.10.10.601.6E-9182207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVVEAKREDA NGEGINEATL GFCLPVLHIG SEVKPMTLPG RRSGPVRRST KGGWTDDEDD  60
MLTEAVRQFD GKNWKQIAEL FPGRTDIQCF RRWQNVLNPE LIKGTWTKEE DDLVIRLVEK  120
HGLSQPRILP KMASRKEYFK QGFKHSDMEL SCAYTRSVQM HKEDRWRNHL NPAIKRDAWT  180
REEEEVLVRT HQIYGNKWTE IAKYLPGSAL LREILSVYKE EIYLYLENTS LREQFLDLQC  240
SSMGDSKCLQ GGNIPIPPED SKCLSKVVES ITEDDSKCTT SGETNYKSWK RVQLNLLNSG  300
GLALGDMKKK IKGDKSADMD SILTTPRHFE NGNFGSMSHA PLQLMDLDDF LSSEMLSKSK  360
NHIQPTPLDL SLSLSCIPSS PESNLRSAAR SFKKPSLMRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-34512076141MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-34512076141MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918509.11e-119transcription factor MYB3R-2
TrEMBLA0A3Q0IA031e-117A0A3Q0IA03_PHODC; transcription factor MYB3R-2-like
STRINGXP_008796801.18e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.28e-54myb domain protein 3r-4