PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s823741g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 185aa MW: 20806.7 Da PI: 10.2506

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s823741g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62	1.2e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw + PDK_30s823741g001 12 KGPWSPEEDESLQKLVQKHGARNWSLISKAIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	55.6	1.2e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ PDK_30s823741g001 66 PFTPEEDDAIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.925	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.42E-33	9	105	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-19	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-27	13	65	IPR009057	Homeodomain-like
CDD	cd00167	1.91E-15	14	56	No hit	No description
SMART	SM00717	4.8E-15	63	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.905	64	113	IPR017930	Myb domain
CDD	cd00167	4.09E-12	66	109	No hit	No description
Pfam	PF00249	6.6E-15	66	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-24	66	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSNRSKDMDR IKGPWSPEED ESLQKLVQKH GARNWSLISK AIPGRSGKSC RLRWCNQLSP 60 QVEHRPFTPE EDDAIIRAHR RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKYSSAAVAP 120 AVDDAAMRYV SYATVGLLAE EESNSGPRTE IMSPRCVLSS TSIPLPLMSV PFPPPQSFYT 180 KEKSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-41	11	112	3	104	C-Myb DNA-Binding Domain
1msf_C	2e-41	11	112	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00632	PBM	Transfer from PK28565.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661458	1e-96	KM661458.1 Ananas bracteatus clone 43635a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811216.1	4e-89	transcription factor MYB44-like isoform X1
Swissprot	O23160	1e-64	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A2H3ZC13	9e-88	A0A2H3ZC13_PHODC; transcription factor MYB44-like isoform X1
STRING	XP_008811216.1	1e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-67	myb domain protein 70

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]