PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s823181g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 200aa    MW: 21770.4 Da    PI: 8.2349
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s823181g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.2e-15128155936
               GATA   9 TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                        Tp++Rrgpdg++tLCnaCGl+++ kg++
  PDK_30s823181g001 128 TPMMRRGPDGPRTLCNACGLMWANKGTM 155
                        *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.5E-123469IPR010399Tify domain
PROSITE profilePS5132014.6153469IPR010399Tify domain
PfamPF062008.3E-133868IPR010399Tify domain
PfamPF062034.9E-1195125IPR010402CCT domain
PROSITE profilePS5101710.0795137IPR010402CCT domain
SMARTSM004013.0E-5121165IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-9126163No hitNo description
Gene3DG3DSA:3.30.50.103.4E-13127159IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.038127169IPR000679Zinc finger, GATA-type
PfamPF003206.6E-13127155IPR000679Zinc finger, GATA-type
CDDcd002021.66E-13128168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEEDHDGAVE GEGMEGDVPS DHANLGDPHE VVAPQVPGNQ LTLSFQGEVY VFDSVSPEKV  60
QAVLLLLGGR EINTGLASIP SSSNPYNKRS NFPQRVASLM RFREKRKERN FDKKIRYNVR  120
KEVALRATPM MRRGPDGPRT LCNACGLMWA NKGTMRDLSK NPPAAIQNAS SEPKERNGTS  180
SVVGEQQPLA VTANGHGSSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799475.11e-136GATA transcription factor 20 isoform X1
SwissprotQ5Z4U56e-72GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3YIX21e-135A0A2H3YIX2_PHODC; GATA transcription factor 20 isoform X1
STRINGXP_008799475.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-60ZIM-like 1