PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s821521g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 733aa    MW: 83602.6 Da    PI: 7.9912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s821521g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.92.9e-133672135
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C nCg +   T+++R+gp+g +tLCnaCG+ ++k ++
  PDK_30s821521g001 36 CLNCGISAkfTSHMRQGPEGRRTLCNACGIAWKKGKQ 72
                       899*988788************************987 PP
2FAR183.43.6e-26106191188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        +fYn+YA ++GFsvrk    ks  ++ + +rt+vCs+eg+r+e+k + ++ +r+r+ tr+gC a++++k++ +gk++vt+++ +HnH+
  PDK_30s821521g001 106 EFYNRYAGMIGFSVRKGWLDKS-SEKVTRSRTLVCSREGFRKEKKGA-KEVKRPRPDTRIGCPARMTIKLTPTGKYHVTEFVPDHNHQ 191
                        6********************9.666799**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.3E-73092IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-93181No hitNo description
Gene3DG3DSA:3.30.50.101.0E-103573IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.11E-73573No hitNo description
PfamPF003208.7E-113672IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403663IPR000679Zinc finger, GATA-type
PfamPF031012.8E-23106191IPR004330FAR1 DNA binding domain
PfamPF105512.8E-30315409IPR018289MULE transposase domain
PROSITE profilePS509669.854583630IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-4584628IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-4605632IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MNATVCGGGS GRGGQDQDPE VHHNSGDDGL EVPPRCLNCG ISAKFTSHMR QGPEGRRTLC  60
NACGIAWKKG KQRKVLDYDA PSQDIANSNM VPEIDMEFES EDRAYEFYNR YAGMIGFSVR  120
KGWLDKSSEK VTRSRTLVCS REGFRKEKKG AKEVKRPRPD TRIGCPARMT IKLTPTGKYH  180
VTEFVPDHNH QPAPPSAMHM LRSQRITTEV QAAEADLSDD SGTTPKSTKE PAGRQVGGLR  240
NIRFLPADYK IGLQSKRMKA MQTGDAEAVL KYLQSMQLCD RSFFYAIQVD EDDKLTNIFW  300
ADLKSVTDFN YFGDVVCLDT TYKASGYGRP FAPFLGVNHH KQIIIFGAAL LYGETTESFK  360
WLLETFKLAM HGKQPKTILT DNSGAISNAI AEVWPGTSHR LCMWQFYQNA VKHLNHVFQA  420
SKTFAKDFSR CIYDYEDEEE FLLEWRTMLD KYDLRNNEWL AKLFEEREKW ALVYGRQIFC  480
GDMGRTLQNA NINSVLKKYL SPQLDLLSFF KQYERMMDEH RYAELQADFH ASQSFPRIPP  540
SKMLRQAANL YTPTVFEMFR KEFEIFMDCM LYNCGEVGTI SEFKITVGEK SKEHFVRLDS  600
SDCSVACSCK KFEVEGVQCG HVLKVLDVRN IKELPERYFL KRWRRDAKAG TEKDPQRVAS  660
DGDPRSPTTT SMHTPLSSYA HHQGFHGMTQ FNQESPVSDL HQQQSNGSTQ LGQGYSTLDM  720
QSQQVFSNSR LNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784343.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2H3XIW70.0A0A2H3XIW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008784343.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-131FAR1-related sequence 5