PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s819571g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 478aa    MW: 52965.2 Da    PI: 9.061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s819571g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12349393554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + ErrRR+++N++f+ Lr llP++     +K +Ka++L  A e+++ L
  PDK_30s819571g004 349 HMISERRRREKLNESFHALRMLLPPC-----TKKDKASVLSNAREFVNTL 393
                        8899*********************9.....9*************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-16343413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-11344398No hitNo description
PROSITE profilePS5088815.243344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15348412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9349393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDFVFLLSAK ARGRFLQSAA RILGCSYICL WSPLPHQSKY VTLSSPLSAV LLPPSPLFHH  60
LILGDTSISH LASVDGWGSH WSSPSGSVSL ELFKAYRNSL FSLDSSCVPG SAYKGGLTYV  120
ELGESELMIS ASMQIQRQFY QEAGIKGQMY TQMSIQQVFS EECIQRSLLG DPFPAPDQGG  180
PSSSSSSFRS LSVGSPEYSS LLLTKAGAHF MPREVGGEQA LLVPPHQMSI MQGYSRHRNV  240
QLPTPADDDA AITRAMLAAI SSPSTSSSPP PLFNYQSPRQ DQAQQSRRSR PVGAFEPYNP  300
ALAPDVGRNP AVHGQKMVKT AVSILRRIYQ MRYERRMQEP RTASNQLHHM ISERRRREKL  360
NESFHALRML LPPCTKKDKA SVLSNAREFV NTLKARISEL EERHRMLEMQ LQPADETKEV  420
GDSTETVEVQ ITRASESTSQ AQRINLRVTA SDWVEELFKE AVTRAVDAVV ARPAATTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352357ERRRRE
2353358RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793239.20.0putative transcription factor bHLH041
TrEMBLA0A2H3Y4B40.0A0A2H3Y4B4_PHODC; putative transcription factor bHLH041
STRINGXP_008782582.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-29bHLH family protein