PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s818991g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29275.2 Da PI: 8.1682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W+t ++ g+ R++k+c++rw +yl PDK_30s818991g005 14 KGAWTKEEDQRLIAYIKAHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde +++++ +lG++ W+ Ia +++ gRt++++k++w+++ PDK_30s818991g005 67 RGNFTEEEDEVIIKLHGMLGNK-WSIIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.882 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 9.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.279 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEVIIK LHGMLGNKWS IIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 LDPQTHRPLS GGNQCNTSSQ PQLVTMTAEA ASKLTDSTTE DGHSGGIIID RDEEYRCLDL 180 NLDLSISLPY NPCSKPSTSS EVLMPPTAAE AATPTSAPPH AQTICLCYHL GFQRSESCSC 240 QTNSGQHVLR YYRPLEEGQH IK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783376.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | P81393 | 4e-97 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2H3XGE2 | 0.0 | A0A2H3XGE2_PHODC; myb-related protein 308-like | ||||
STRING | XP_008783376.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-92 | myb domain protein 4 |
Publications ? help Back to Top | |||
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