PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s817661g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 240aa MW: 27132.7 Da PI: 8.2461

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s817661g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	22	66	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W + Ed +l ++v+++G+++W++Ia+++ gR++k+c++rw++ PDK_30s817661g002 22 CHWRPSEDARLRELVARHGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 66 57***************************.*********996 PP
2	Myb_DNA-binding	46.4	9.4e-15	74	116	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ +eE+e+l a k +G++ W++Iar ++ gRt++ +k++w+ PDK_30s817661g002 74 TAFNEEEEERLWAAYKFYGSK-WALIARFFP-GRTDNAVKNHWHV 116 5799***************.*****.*********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.639	16	71	IPR017930	Myb domain
SMART	SM00717	3.7E-13	20	69	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-16	21	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.44E-27	21	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-25	23	73	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-13	24	65	No hit	No description
PROSITE profile	PS51294	16.818	72	122	IPR017930	Myb domain
SMART	SM00717	6.5E-12	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	74	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-17	74	120	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-9	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSLSTELRG NEGGHTKISV RCHWRPSEDA RLRELVARHG PHNWNLIAEK LEGRSGKSCR 60 LRWFNQLDPR INKTAFNEEE EERLWAAYKF YGSKWALIAR FFPGRTDNAV KNHWHVMVAR 120 RRRDMCNGYR RMEPSATFPN PSVPTLPMMM EMGSSHEKLV AATSMCNEKF STPASCFYNS 180 APMLMAMGVH QAGHSEANSG ASTTESVANP RNDVIMHAER DDDGEQMTLP FIDFLGVGAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-30	20	121	6	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787993.1	1e-143	transcription factor CSA-like
Swissprot	Q9SEZ4	2e-62	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A2H3XS73	1e-142	A0A2H3XS73_PHODC; transcription factor CSA-like
STRING	XP_008787993.1	1e-142	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-64	myb domain protein 105

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]