PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s817661g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 119aa MW: 14266.4 Da PI: 11.3063 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 13 | 57 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W + Ed +l ++v+++G+++W++Ia+++ gR++k+c++rw++ PDK_30s817661g001 13 CHWRPSEDARLRELVARHGPHNWNLIAEKLE-GRSGKSCRLRWFNQ 57 57*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 65 | 107 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ +eE+e+l a k +G++ W++Iar ++ gRt++ +k++w+ PDK_30s817661g001 65 TAFNEEEEERLWAAYKFYGSK-WALIARFFP-GRTDNAVKNHWHV 107 6799*****************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.041 | 7 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-13 | 11 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.08E-28 | 12 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-16 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 14 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-11 | 15 | 56 | No hit | No description |
SMART | SM00717 | 6.5E-12 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.818 | 63 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 65 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-12 | 65 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.33E-8 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MPTAISLKIS VRCHWRPSED ARLRELVARH GPHNWNLIAE KLEGRSGKSC RLRWFNQLDP 60 RINKTAFNEE EEERLWAAYK FYGSKWALIA RFFPGRTDNA VKNHWHVMVA RRRRDIKIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-31 | 11 | 112 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787993.1 | 1e-75 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 4e-58 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2H3XS73 | 3e-74 | A0A2H3XS73_PHODC; transcription factor CSA-like | ||||
STRING | XP_008787993.1 | 4e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 7e-58 | myb domain protein 56 |