PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s817321g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 33796 Da PI: 7.2575 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + +G g+W++++r g+ R++k+c++rw +yl PDK_30s817321g001 14 RGLWSPEEDEKLIKHISTFGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ PDK_30s817321g001 67 RGSFSAQEESLIIELHRVLGNK-WAQIAKQLP-GRTDNEVKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.643 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.74E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.817 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.41E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGRHSCCNKQ KVRRGLWSPE EDEKLIKHIS TFGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SAQEESLIIE LHRVLGNKWA QIAKQLPGRT DNEVKNFWNS NIKKKLMAHA 120 VGGLNPISCT DHYYILNGTP MPHGYDGHDM TAHIANRANA PSPLEASSYS HTWPSDPRHH 180 LHQRPDDHRH RVEDYGGAPV DNDEIVPLQY TEAPCSGSKL VVAYDQSVDT QECNIPTLSV 240 SCEIDANARV PSFPTRPHLY TPQQSTNPMD FMDMIMGSSS SGEVSDDSLA MVPSLQPHWV 300 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775155.1 | 0.0 | transcription factor MYB83-like | ||||
TrEMBL | A0A2H3WXG9 | 0.0 | A0A2H3WXG9_PHODC; transcription factor MYB83-like | ||||
STRING | XP_008775155.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 5e-73 | myb domain protein 26 |