PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s814541g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 27997.7 Da PI: 6.1654 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 53.4 | 5.7e-17 | 40 | 70 | 26 | 56 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRla 56 +AtPk+i+elmkv+gLt+++vkSHLQkYRl+ PDK_30s814541g003 40 VATPKQIRELMKVDGLTNDEVKSHLQKYRLH 70 7****************************97 PP | |||||||
2 | G2-like | 38.3 | 2.9e-12 | 180 | 206 | 26 | 52 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQk 52 +AtPk+i+elmk +gLt+++vkSHLQ PDK_30s814541g003 180 VATPKQIRELMKGDGLTNDEVKSHLQE 206 7*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 4.1E-14 | 39 | 70 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.5E-15 | 40 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.11E-7 | 40 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-10 | 179 | 207 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.6E-9 | 180 | 211 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKLLLVTIGD KGTPRYLQFP VIRTAQFRSF DLIEVSLDAV ATPKQIRELM KVDGLTNDEV 60 KSHLQKYRLH TRRVPNASAA VNHPVVVMGD LWVPQEHYSA SQKSASQSGS PQTPLQLAVK 120 ISDAELEFLI GEDSVEDEVA VKLLLVTIGN KGTPRYLQFP VIRTAQFRSF DLIEVSLDAV 180 ATPKQIRELM KGDGLTNDEV KSHLQEHYSA SQKSASQSGS PQTPLQLAGA GHTISITAGD 240 SCEEEDGKSE SCSWK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026659986.1 | 8e-78 | uncharacterized protein LOC113462643 | ||||
TrEMBL | A0A3Q0HZG0 | 2e-76 | A0A3Q0HZG0_PHODC; uncharacterized protein LOC113462643 | ||||
STRING | XP_008792690.1 | 3e-45 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 4e-22 | G2-like family protein |