PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s813012g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 481aa MW: 51017.7 Da PI: 9.5598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s813012g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	83	103	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H PDK_30s813012g001 83 CEICNKGFQRDQNLQLHRRGH 103 *******************88 PP
2	zf-C2H2	11.2	0.0012	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + s+ k H + + PDK_30s813012g001 157 WKCDKCPKKYAVLSDWKAHVKIC 179 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.5E-5	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.41E-7	80	103	No hit	No description
SMART	SM00355	0.11	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	81	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-4	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.41E-7	152	177	No hit	No description
SMART	SM00355	120	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSNITGDGGS FSSENHTGEE VQQSQQQLPL HGTITATTNG NGSQPAPSPL VKKKRNHPGT 60 PDPTAEVIAL SPATLLAKNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSTEVRKK 120 VYVCPETTCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCPKKYAVLS DWKAHVKICG 180 TREYKCDCGT IFSRKDSFIT HRAFCDALAE ENTKAKNGVM PTMSPNLQAQ PPELMMPIGT 240 SIGSLPVGVS DFDNHDIKNP LKGFAYDLMP TSLRSHTMAG TMLSSPTAAT LFSSGTFPSG 300 YNGLSDDAKT GRPAIASAHM SATALLQKAA QMGVNGGAFA NQFFDIGMGG GSAVSDAAGV 360 LPSNAGVFVG GGGHSHGLLK ALEHASGGGG SLMQGGSGRS GVRYGGGGTG DVTTLDFLGV 420 SGARSVAAMG LHEQQQQHQG MEFGGVGRKR LLGLHPFQQQ QQLSNGQGAS MEKVVWDVLS 480 G

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSNITGDGGS FSSENHTGEE VQQSQQQLPL HGTITATTNG NGSQPAPSPL VKKKRNHPGT  60
PDPTAEVIAL SPATLLAKNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSTEVRKK  120
VYVCPETTCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCPKKYAVLS DWKAHVKICG  180
TREYKCDCGT IFSRKDSFIT HRAFCDALAE ENTKAKNGVM PTMSPNLQAQ PPELMMPIGT  240
SIGSLPVGVS DFDNHDIKNP LKGFAYDLMP TSLRSHTMAG TMLSSPTAAT LFSSGTFPSG  300
YNGLSDDAKT GRPAIASAHM SATALLQKAA QMGVNGGAFA NQFFDIGMGG GSAVSDAAGV  360
LPSNAGVFVG GGGHSHGLLK ALEHASGGGG SLMQGGSGRS GVRYGGGGTG DVTTLDFLGV  420
SGARSVAAMG LHEQQQQHQG MEFGGVGRKR LLGLHPFQQQ QQLSNGQGAS MEKVVWDVLS  480
G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	153	214	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-32	153	214	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLRQRTSTEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026656132.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-112	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3Q0HRN8	0.0	A0A3Q0HRN8_PHODC; protein indeterminate-domain 2-like
STRING	XP_008813374.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]