PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s812061g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 364aa MW: 40045.8 Da PI: 4.9735

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s812061g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	22	65	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ PDK_30s812061g001 22 RGSFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 65 899*****************.*****.*******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.31	1	16	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	2	28	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-20	3	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.725	17	71	IPR017930	Myb domain
SMART	SM00717	2.0E-12	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-13	22	65	IPR001005	SANT/Myb domain
CDD	cd00167	2.38E-9	24	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-20	29	67	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
LQRCGKSCRL RWINYLRPDL KRGSFSQQEE DLIIELHAVL GNRWSQIAAQ LPGRTDNEIK 60 NLWNSCIKKK LRQRGIDPNT HKPLSETEGG EDKVPANEDK TAGSSELKLL APPSGNLNSV 120 VPELAPPLMS MVDGSNSENL VASTKDFFLY RFAAGHESSS GCQPTNSMDY LPPRNSVYSP 180 SSSMDQNPPL WFNQNARLLD MNPELTCNMM MSAALPSVSR STVSTSMGLK PTARMAADNS 240 LPGFHCLEAG NSSNNSASSG NSGGGIEPQS NNSIYESSIF QWPELVPNRQ AEIQLGGEPE 300 DLKWSEYLNG TIPLSADIQN QTQLLNGAVK EENQFPIDGL SSWLQPPELF GKDFQRISTV 360 FKQI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

LQRCGKSCRL RWINYLRPDL KRGSFSQQEE DLIIELHAVL GNRWSQIAAQ LPGRTDNEIK  60
NLWNSCIKKK LRQRGIDPNT HKPLSETEGG EDKVPANEDK TAGSSELKLL APPSGNLNSV  120
VPELAPPLMS MVDGSNSENL VASTKDFFLY RFAAGHESSS GCQPTNSMDY LPPRNSVYSP  180
SSSMDQNPPL WFNQNARLLD MNPELTCNMM MSAALPSVSR STVSTSMGLK PTARMAADNS  240
LPGFHCLEAG NSSNNSASSG NSGGGIEPQS NNSIYESSIF QWPELVPNRQ AEIQLGGEPE  300
DLKWSEYLNG TIPLSADIQN QTQLLNGAVK EENQFPIDGL SSWLQPPELF GKDFQRISTV  360
FKQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-22	3	71	40	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807932.1	0.0	transcription factor MYB61-like
TrEMBL	A0A2H3Z3R0	0.0	A0A2H3Z3R0_PHODC; transcription factor MYB61-like
STRING	XP_008807932.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2310	37	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	6e-54	myb domain protein 55