PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s810281g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27280.7 Da PI: 8.9948 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 90 | 144 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eql+ Le+ F+++++++++++++LA +l+L rqV vWFqNrRa+ k PDK_30s810281g003 90 RKKLRLTREQLTFLENSFREHNTLNQTQKQQLAYQLNLRPRQVEVWFQNRRARTK 144 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.2 | 3.9e-37 | 90 | 178 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq+++LE+sF+e+++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+ +++l++en+rL++e eeLr+ PDK_30s810281g003 90 RKKLRLTREQLTFLENSFREHNTLNQTQKQQLAYQLNLRPRQVEVWFQNRRARTKLKQTEVDCAFLKKYCENLRNENRRLKRELEELRA 178 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.26E-19 | 79 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 83 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-15 | 88 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-14 | 90 | 147 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 90 | 144 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.2E-16 | 146 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.0E-9 | 146 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEEDECNIGL GLAIGAGRHF TSNQSGNGER KPPVQFHILF PPRPKEGEEE EEEEPTRDKE 60 RHKSKHINEE EDSSTKDIIS DGGSNRVGMR KKLRLTREQL TFLENSFREH NTLNQTQKQQ 120 LAYQLNLRPR QVEVWFQNRR ARTKLKQTEV DCAFLKKYCE NLRNENRRLK RELEELRAME 180 PGYPFHTRVP KAATPTMCPS CKRIMASGSE KGNGVLDGRK GRDQLKPVNN GLPLDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026660422.1 | 1e-172 | homeobox-leucine zipper protein HAT9-like | ||||
Swissprot | A2Z1U1 | 8e-49 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 1e-48 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3Q0I4S7 | 1e-171 | A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_008789723.1 | 1e-161 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-40 | homeobox from Arabidopsis thaliana |