PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s809821g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 357aa    MW: 39738.9 Da    PI: 7.0657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s809821g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.8e-1793138147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s809821g005  93 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 138
                        899*****************************.***********996 PP
2Myb_DNA-binding57.43.5e-18145188146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
  PDK_30s809821g005 145 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 188
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.54388139IPR017930Myb domain
SMARTSM007171.9E-1492141IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2893186IPR009057Homeodomain-like
PfamPF002496.4E-1693138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2694146IPR009057Homeodomain-like
CDDcd001678.42E-1396137No hitNo description
PROSITE profilePS5129427.796140194IPR017930Myb domain
SMARTSM007171.1E-15144192IPR001005SANT/Myb domain
PfamPF002492.6E-15145187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20147193IPR009057Homeodomain-like
CDDcd001671.87E-7156187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAPKHLKTTD ETGFFHPPPP PPPPFHGGLG SSSGGMECRS GGMGFPMEQE KNKGWGFQRF  60
SGEQGYHRDE KEDQSEEGED GSHEDDQPKL CARGHWRPAE DAKLKELVSQ YGPQNWNLIA  120
EKLEGRSGKS CRLRWFNQLD PRINRRAFSE EEEERLLAAH RLYGNKWALI ARLFPGRTDN  180
AVKNHWHVIM ARKQREQSSS YRRRKSSNSS PNAPSSQALP NKMEVNTSNN ACSGESTITS  240
TRDESASAGT DLSLSSFTSG IIPNFLTIYS RSDEKLVAGR NGCYEKFGDH GISFPHGAPM  300
MLVPCFDHSG LSDSTTEASA TESVANHRTS AWLHGKRDHE RENVSLPFFD FLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32931937107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797327.10.0transcription factor CSA-like isoform X1
TrEMBLA0A2H3YDU90.0A0A2H3YDU9_PHODC; transcription factor CSA-like isoform X1
STRINGXP_008797327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.13e-61myb domain protein 56