PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s809091g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 103aa MW: 10876.3 Da PI: 9.0988 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.1e-16 | 42 | 76 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ k PDK_30s809091g002 42 CQNCGISEklTPAMRRGPAGPRSLCNACGLMWANK 76 ********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.7E-6 | 36 | 95 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.71E-10 | 40 | 83 | No hit | No description |
CDD | cd00202 | 4.22E-10 | 41 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.1E-14 | 41 | 77 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 42 | 69 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.9E-14 | 42 | 77 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MKRRKGQFAG KANPEDEASV SSSCDPAQSS SHDDNPREMK ICQNCGISEK LTPAMRRGPA 60 GPRSLCNACG LMWANKEYLS GIGPAGPLSP ASFKGPPNTN PKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777941.1 | 6e-52 | GATA transcription factor 19-like | ||||
Swissprot | A2XKR7 | 7e-27 | GAT18_ORYSI; GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 6e-27 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A2H3X3X8 | 1e-50 | A0A2H3X3X8_PHODC; GATA transcription factor 19-like | ||||
STRING | XP_008777941.1 | 2e-51 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-21 | ZIM-LIKE 2 |
Publications ? help Back to Top | |||
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