PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s808611g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 68aa    MW: 7877.13 Da    PI: 9.0841
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s808611g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB97.41.2e-301641792
              NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                       mkk+lPan+ki+kdaketvq            easdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre
  PDK_30s808611g003  1 MKKALPANGKIAKDAKETVQ------------EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYRE 64
                       9*****************98............69*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.2E-26165IPR009072Histone-fold
SuperFamilySSF471131.95E-21165IPR009072Histone-fold
PfamPF008088.4E-62043IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-122644No hitNo description
PRINTSPR006151.1E-124563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MKKALPANGK IAKDAKETVQ EASDKCQREK RKTINGDDLL WAMATLGFED YIEPLKLYLQ  60
KYRENFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-281641893NF-YB
4awl_B3e-281641994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-281641994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658710.17e-40nuclear transcription factor Y subunit B-like isoform X10
SwissprotP252095e-37NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A3Q0HZD12e-38A0A3Q0HZD1_PHODC; nuclear transcription factor Y subunit B-like isoform X10
STRINGXP_008805034.12e-36(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2563055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-37nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]