PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s807041g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | AP2 | ||||||||
Protein Properties | Length: 727aa MW: 77755.2 Da PI: 6.4344 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.7e-11 | 299 | 355 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PDK_30s807041g004 299 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 355 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.6 | 8.4e-15 | 398 | 449 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PDK_30s807041g004 398 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 449 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.80E-19 | 299 | 365 | No hit | No description |
Pfam | PF00847 | 5.4E-9 | 299 | 355 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-15 | 299 | 365 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-12 | 300 | 364 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.385 | 300 | 363 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-23 | 300 | 369 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 301 | 312 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 398 | 449 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 398 | 459 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.37E-25 | 398 | 459 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 399 | 458 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 399 | 457 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 399 | 463 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 439 | 459 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MASMNNWLGF SLSPQELPPS QPHQSPTLIS GDEVSADCYG LSTDPASAPP LGIPTLRSDG 60 SFGILEALNR PNSHPQDWSM KSLDFKGSSS ELSILVGSSS NQNNMDHDEP KLEDFLGGNS 120 FSDHDQKLPP GCSSIPGTYD NSGDYMFSNC SLQLPAAASM TSNGGNNGGL MNSTGTGSSS 180 NSIGLSMIKT WLRNQPAPLQ QPEGNSNMDS AGTSNCGRGT LEGGVGGPMA SSQSLSLSMS 240 TGSQSSSALP LMAAAASGGG ESSSSENKQK GSGSSLDAQS GSIEAVPRKS IDTFGQRTSI 300 YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTT 360 NFPISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA 420 GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPIGGAAKR 480 LKDVSEHAEA SVDGRRTDDD NLTSQLTDGI SSSYASHAHH HGWPPFAFPQ AQPLAMHYPY 540 SQQRGWCKQE QDSVMATAHT LQDLQQLHLG NNTHNFFQPS VIHNLISMDS SSMEHSTGSN 600 SVIYNGSMGG SSGGYQGVVG GSGRYALPVS TMVVDQGQGN QGSSSFGENE GKAIGYENML 660 GSTDPYGGRS VYYLSQQSSG GVVKDNGYDQ SGGCNTWMQP SVQAVAPRAN NVAVCHGAPL 720 FTVWNDA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791735.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A2H3Y0T5 | 0.0 | A0A2H3Y0T5_PHODC; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_008791735.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-122 | AP2 family protein |