PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s806531g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 686aa    MW: 76054 Da    PI: 5.1475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s806531g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73.1e-2168123156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +rk +++t++q++eLe++F+ +++p+ ++r+eL++klgL  +qVk+WFqNrR++ k
  PDK_30s806531g001  68 KRKYQRHTPDQIKELEAVFRVCPHPDDKQRKELSQKLGLRPQQVKFWFQNRRTQSK 123
                        7999*************************************************998 PP
2START121.41.2e-3831542294205
                        EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
              START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                        ++aelq++splvp R+ vf+Ry++++ +g+wvivdvS +++++ +     +R +++pSg+li++++ng sk+twvehv+++++ +h +++ +
  PDK_30s806531g001 315 ITAELQVPSPLVPpRECVFLRYCKKHAEGVWVIVDVSMNNRDNSE-----IRYRRRPSGCLIQEMPNGSSKITWVEHVEVDDSGVHDMYKAV 401
                        5799**************************************988.....8***************************************** PP

                        HHHHHHHHHHHHHHHTXXXXX CS
              START 185 vksglaegaktwvatlqrqce 205
                        v+sgla+gak+w++tl+rq e
  PDK_30s806531g001 402 VNSGLAFGAKRWLSTLERQWE 422
                        *****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2056125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2157106IPR009057Homeodomain-like
PROSITE profilePS5007117.45965125IPR001356Homeobox domain
SMARTSM003896.8E-2167129IPR001356Homeobox domain
PfamPF000461.1E-1868123IPR001356Homeobox domain
CDDcd000861.79E-1968126No hitNo description
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.603.3E-4107152IPR009057Homeodomain-like
SMARTSM002347.6E-11222423IPR002913START domain
CDDcd088759.14E-67260422No hitNo description
Gene3DG3DSA:3.30.530.206.3E-8266421IPR023393START-like domain
PfamPF018521.3E-31316422IPR002913START domain
SuperFamilySSF559611.65E-23316424No hitNo description
PROSITE profilePS5084827.887323426IPR002913START domain
SuperFamilySSF559616.04E-5440647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MEFQGRRMNM FEGQAPAPQQ NTDPESFQAA MEIEVPRLVD EEDLSANPRS EVPVDASSGE  60
DQRPRAPKRK YQRHTPDQIK ELEAVFRVCP HPDDKQRKEL SQKLGLRPQQ VKFWFQNRRT  120
QSKNHRERDE NNKLRKENDE LRRENFRMKE ALNKPCCKNC GGPCAIGEMS PIDEHRLTLE  180
NACLQAEIDT VVELIYNNGD ETETLSPEPS DQLVVSGVVT GIAQVPVDTM GAESSRAAEL  240
RSSSPTVQPR AQVQRPFFES LAGLAMEELF MMARTCEPLW IRGLDGYSEI LNEDEYAGAF  300
PRGLGPKLPA LKTEITAELQ VPSPLVPPRE CVFLRYCKKH AEGVWVIVDV SMNNRDNSEI  360
RYRRRPSGCL IQEMPNGSSK ITWVEHVEVD DSGVHDMYKA VVNSGLAFGA KRWLSTLERQ  420
WERLESISAI NNPRFGINAN PEGRHSILRL VERMVVGFCG GVSGSRAQDW SHISGVGAED  480
VKITAKRNPL ATCEPPGILV NACMSLWLPL PPGRVFHFLR TSRNEVFRAP SIWDVLTNGG  540
AIEEGCHIAN GREEGNCISI LNVRGPENPS HVMILQENCS HATGSYVIYA PIDIVALNAI  600
LTGQEADYVA LLPCGFTIFP DLPHGMQDGI DGEGGSGGSL LTVSFQILAD SNPHSNISAD  660
TIATLTALVT NTCDQVISSL FGNNVP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026655767.10.0homeobox-leucine zipper protein ROC7-like
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A3Q0HQN50.0A0A3Q0HQN5_PHODC; homeobox-leucine zipper protein ROC7-like
STRINGXP_008812148.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3753923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]