PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s806121g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 356aa MW: 39632.2 Da PI: 7.3246

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s806121g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	1.9e-33	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl PDK_30s806121g001 24 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 78 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-32	21	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.876	21	81	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	24	79	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	26	76	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-26	118	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHDRFVDA VTQLGGPDKA TPKTIMRVMG 60 VKGLTLYHLK SHLQKFRLGK QPHKELNDHS VKDASALEMQ RNGASSSGIM SRTMNENVHI 120 TEAIRMQMEV QRRLHEQLEV QKHLQMRIEA QGKYMQTILE KACQTLAGEG MASGSYKALG 180 NQGVVDMAAM KDMGSQMSYP SLQDLQLYGG DQLDMQQQMD RPLDGFFPTN EGICLGKKRT 240 HPYSSNGKSP LIWVDDFRLQ ELGSAAACMG TQEEPSKSDQ LQLAPSVIDS GMDMDSMTDV 300 YETKPVLSTD SMGEKKYEGS SKLERPSPQR ATLPVERINP MIRGGALPQT RNISYG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNSHERPMSC VQGDSGLVLT TDPKPRLRWT VELHDRFVDA VTQLGGPDKA TPKTIMRVMG  60
VKGLTLYHLK SHLQKFRLGK QPHKELNDHS VKDASALEMQ RNGASSSGIM SRTMNENVHI  120
TEAIRMQMEV QRRLHEQLEV QKHLQMRIEA QGKYMQTILE KACQTLAGEG MASGSYKALG  180
NQGVVDMAAM KDMGSQMSYP SLQDLQLYGG DQLDMQQQMD RPLDGFFPTN EGICLGKKRT  240
HPYSSNGKSP LIWVDDFRLQ ELGSAAACMG TQEEPSKSDQ LQLAPSVIDS GMDMDSMTDV  300
YETKPVLSTD SMGEKKYEGS SKLERPSPQR ATLPVERINP MIRGGALPQT RNISYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	240	KKRTH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010914284.1	0.0	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	1e-108	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2H4A048	0.0	A0A2H4A048_PHODC; myb family transcription factor APL
STRING	XP_008809902.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-105	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]