PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s804301g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31604.4 Da PI: 6.9168 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++k +G g+W +++++ g++R++ +c++rw++yl PDK_30s804301g003 14 KGPWSATEDKILTDYIKAHGEGRWGKVPNRAGLNRCGRSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt+ ++k++w+++l PDK_30s804301g003 67 RGNISLEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDTEIKNYWNTVL 112 78999*****************.*********.************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.6 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.47E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.32E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.022 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MDRSACYSKE GLNKGPWSAT EDKILTDYIK AHGEGRWGKV PNRAGLNRCG RSCRLRWLNY 60 LRPDVKRGNI SLEEEDLIIR LHKLLGNRWS LIAGRLPGRT DTEIKNYWNT VLKKKVQARS 120 VPLTNLVCLN QDEERKSKNK TSVQAPSFEN PTQSSEAEVS LNQRGNQNAH KNGLKSLVIE 180 DLAPDSFLLA PQDYDLLNLR TGFDIEGLSQ PSLPDSQFFQ LLGGNIQQDM RDCDNGKLSA 240 SFDENVFSSR GVFENWVGTD HIQPYGSLDL GSLAAFFESE S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786612.1 | 0.0 | transcription factor WER-like | ||||
TrEMBL | A0A2H3XPC4 | 0.0 | A0A2H3XPC4_PHODC; transcription factor WER-like | ||||
STRING | XP_008786612.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25480 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-56 | myb domain protein 3 |