PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s804221g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 407aa MW: 45727.6 Da PI: 9.7844

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s804221g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	173	226	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PDK_30s804221g003 173 PRMRWTTNLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 226 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	170	226	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	171	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	173	226	IPR006447	Myb domain, plants
Pfam	PF00249	5.1E-7	174	225	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MELFPAQPDL SLQISPPDSK PASSWSRSDE GRDFGFWRRA MDSASSSIKS STSPSTQKAD 60 TGGFDLSLAN PSVVSSTNNT SHLPHQYQYF HLHHHQKFLH DGYRQDLGGM RPIRGIPVYY 120 NPPSFSFLHN QQHHQHLCGS SSTASSIHYT AQGMPRSPRL LPRFPAKRGM RAPRMRWTTN 180 LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DRPATSSEIS 240 DDNLLNIRGS EASVQHVRSG GSHSTCSGLW NNTSSPIYFR QIKVPPFIPF LSIIPISIQE 300 VTKSTRDYGF VPFVRHEVIV EPPRYGAMIS TSSLRKTRGA NLYLPLQETD PLEKSTSKDQ 360 KIDMEALFVV QDMQSKSFEM VSDLNSSCVS EMSTKKPNLE FTLGRPH

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MELFPAQPDL SLQISPPDSK PASSWSRSDE GRDFGFWRRA MDSASSSIKS STSPSTQKAD  60
TGGFDLSLAN PSVVSSTNNT SHLPHQYQYF HLHHHQKFLH DGYRQDLGGM RPIRGIPVYY  120
NPPSFSFLHN QQHHQHLCGS SSTASSIHYT AQGMPRSPRL LPRFPAKRGM RAPRMRWTTN  180
LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DRPATSSEIS  240
DDNLLNIRGS EASVQHVRSG GSHSTCSGLW NNTSSPIYFR QIKVPPFIPF LSIIPISIQE  300
VTKSTRDYGF VPFVRHEVIV EPPRYGAMIS TSSLRKTRGA NLYLPLQETD PLEKSTSKDQ  360
KIDMEALFVV QDMQSKSFEM VSDLNSSCVS EMSTKKPNLE FTLGRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	174	228	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663270.1	0.0	probable transcription factor KAN2
Swissprot	Q9C616	5e-62	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3Q0ICH3	0.0	A0A3Q0ICH3_PHODC; probable transcription factor KAN2
STRING	XP_008800121.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9438	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	1e-49	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]