PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s804151g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 41216.3 Da PI: 6.7857 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 98 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ PDK_30s804151g001 98 RGHWRPAEDSKLRELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 143 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 150 | 193 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PDK_30s804151g001 150 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 193 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.42 | 93 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-14 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 98 | 143 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-28 | 98 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-26 | 99 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.69E-13 | 101 | 142 | No hit | No description |
PROSITE profile | PS51294 | 26.953 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-15 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 150 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 152 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.63E-12 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGSLSINPTS SVESNCSNKG SEKTFWTSSF RRNYIGLEGH PPQSSEDEGG KCSDAIYGFG 60 ENHINAIGEE SPDGENTNEG SLAGKEAAEY GQSKLCARGH WRPAEDSKLR ELVALHGPQN 120 WNLIAEKLEG RSGKSCRLRW FNQLDPRINR SAFTEEEEEK LMAAHRLYGN KWAMIARLFP 180 GRTDNAVKNH WHVIMARKYR EQSNAYRRRK LSQAVLHRGL EDAAATSVTC GFNSSLHLPF 240 AHLSLAMGGS NGSYHSATGA GAEDSVSCYG GFCSAQAPYD FLSGIKAQGK TTSFHGTNNW 300 RWDRPRDESF MGSNSQRPFM VAMQQPSYLS DFSDCSASGA SATESSSSSS FKENGENGQS 360 EATTTPPFID FLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-33 | 98 | 198 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM662592 | 2e-84 | KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008806024.1 | 0.0 | transcription factor CSA isoform X1 | ||||
TrEMBL | A0A2H3YZI7 | 0.0 | A0A2H3YZI7_PHODC; transcription factor CSA isoform X1 | ||||
STRING | XP_008806024.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-74 | myb domain protein 105 |