PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s804101g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 327aa MW: 36121.4 Da PI: 6.4305

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s804101g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9e-14	23	68	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+l ++v+++G+++W++I ++ + Rt+k+c++rw + PDK_30s804101g002 23 KGPWMAEEDEILMEYVRKHGPRDWSSIRSKGLLPRTGKSCRLRWVN 68 79***********************8876677********87 PP
2	Myb_DNA-binding	45.2	2.2e-14	80	120	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + +d+ +++G++ W++Ia +++ gRt++++k++w PDK_30s804101g002 80 KFSPEEERIVIDLQARFGNK-WARIATYLP-GRTDNDVKNFWS 120 79****************.*****.*********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.562	18	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	21	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.62E-28	21	119	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-11	22	72	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-12	23	68	IPR001005	SANT/Myb domain
CDD	cd00167	3.99E-12	25	70	No hit	No description
PROSITE profile	PS51294	18.037	75	127	IPR017930	Myb domain
SMART	SM00717	1.1E-12	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-13	80	120	IPR001005	SANT/Myb domain
CDD	cd00167	3.33E-11	80	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-17	80	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MQGACGGGRR SNGKEEGGMV MRKGPWMAEE DEILMEYVRK HGPRDWSSIR SKGLLPRTGK 60 SCRLRWVNKL KPDLKTSGCK FSPEEERIVI DLQARFGNKW ARIATYLPGR TDNDVKNFWS 120 TRQKRLARIL RAPLPSKPNK NHGKVPISSH EVPVVLISSS FCHQGHSLDL ILFEGDSSNG 180 QCCQDASKIT QMPDIMSPVP LDIETALPLL EPAMEKEQCL SNTLPPPHLP FEHLPHSLLD 240 LPVLPEDPPE LLTAFGDVNF PGVHACPELC PCMAPPEGLP FFGLEAGHSG IRRVDGHPGT 300 PDIFDDLPAD MFDYLELPPA PASSTSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-28	23	125	4	103	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-28	23	125	4	103	C-Myb DNA-Binding Domain
1msf_C	4e-28	23	125	4	103	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026665433.1	1e-171	probable transcription factor MYB58
Swissprot	Q0JB89	1e-80	MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBL	A0A3Q0IEK3	1e-170	A0A3Q0IEK3_PHODC; probable transcription factor MYB58
STRING	XP_008807969.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5700	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-60	MYB family protein

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]