PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s798541g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 464aa    MW: 51410 Da    PI: 9.3378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s798541g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lvd+++  G g+W++ ++  g+ R++k+c++rw +yl
  PDK_30s798541g001 14 KGPWTPEEDKILVDYIQSNGHGSWRSLPQLAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding50.74.1e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE++ +++++   G++ W+tIa++++ gRt++++k++w+++l
  PDK_30s798541g001  67 RGPFTLEEQKSIIQLHGIVGNK-WSTIAAHLP-GRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23664IPR009057Homeodomain-like
PROSITE profilePS5129416.291961IPR017930Myb domain
SuperFamilySSF466892.55E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001671.91E-91661No hitNo description
PROSITE profilePS5129425.38162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665116IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.70E-1069112No hitNo description
PfamPF030041.7E-6278355IPR004252Probable transposase, Ptta/En/Spm, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGRARCCDKQ GLKKGPWTPE EDKILVDYIQ SNGHGSWRSL PQLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TLEEQKSIIQ LHGIVGNKWS TIAAHLPGRT DNEIKNYWNT HLKRRLLRMG  120
INPDTYAPAT FTSSPGTTGG GASSSSSFPA PSGGRGPAVQ RVPPLLLRRL RLCLHLPSFR  180
EHPSQAGARL LPPHLELRGG GGDQVAGVDS SGSNAVEGTS EESYELYLDF GGDELGLFSS  240
HLGSFSLFSG DLHDASLDTA FKILLSLRPC LDAPKIKFGR KPTIVESFNR MHKTKQGMEG  300
YVDKRSEAIM TKYSAEYSKK YGDASTLDAS PRDYNLWFEA TDVPTHGRVY GFSPLEDLTG  360
IIGQSSSSST SISQAPELYT REDFLGILEH KKKPWQEEVL QKIREEIGFG PRHANQKSNG  420
ILEHKKKPWQ EEVLQKIREE IGFGPRHANQ KSNGDSGFAV HASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028552051.17e-98transcription factor MYB41
TrEMBLA0A2I0WL197e-99A0A2I0WL19_9ASPA; Myb-related protein Myb4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-71myb domain protein 17